Evidence map›Paper›PMID 41232676›Full record

ArticleJournal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance2025

Fully automated on-scanner aortic four-dimensional flow magnetic resonance imaging processing and hemodynamic analysis.

Justin Baraboo, Michael Scott, Haben Berhane, Michael Markl, Ning Jin, Kelvin Chow

Abstract read
In one paragraph

Article in Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Justin BarabooNorthwestern Radiology, Chicago, Illinois, USA. Electronic address: Justin.Baraboo@northwestern.edu.
Michael ScottNorthwestern Radiology, Chicago, Illinois, USA.
Haben BerhaneNorthwestern Radiology, Chicago, Illinois, USA.
Michael MarklNorthwestern Radiology, Chicago, Illinois, USA.
Ning JinCardiovascular MR R&D, Siemens Medical Solutions USA, Inc., Malvern, Pennsylvania, USA.
Kelvin ChowNorthwestern Radiology, Chicago, Illinois, USA; Cardiovascular MR R&D, Siemens Medical Solutions USA, Inc., Malvern, Pennsylvania, USA.

Funding

Graduate Training Program for Magnetic Resonance ImagingT32EB025766 · NIBIB · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Michael Markl · 2019 to 2026
$1.6M
AI Driven End-to-End 4D flow MRI Pipeline for Hemodynamic Assessment in BAV DiseaseR01HL180406 · NHLBI · NORTHWESTERN UNIVERSITY · PI Michael Markl · 2025 to 2026
$1.4M
Arrhythmia-resolved 5D Flow MRI in Atrial Fibrillation and StrokeF31HL165915 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BARABOO, JUSTIN J · 2022 to 2023
$86k
Deep Learning 4D flow MR Pipeline for the Automated Assessment of Aortic Hemodynamics in BAVF31HL168876 · NHLBI · NORTHWESTERN UNIVERSITY · PI BERHANE, HABEN · 2025 to 2025
$46k
NHLBI NIH HHS F31 HL165915NHLBI NIH HHS F31 HL168876NHLBI NIH HHS R01 HL180406NIBIB NIH HHS T32 EB025766
6 · The paper itself

Abstract

backgroundFour-dimensional (4D) flow cardiovascular magnetic resonance (CMR) is a valuable technique for evaluating cardiovascular hemodynamics, but it requires cumbersome, offline preprocessing and regional segmentation prior to quantifications or visualizations.

methodsThe Framework for Image Reconstruction (FIRE) framework was used to integrate 4D flow processing tasks directly into the scanner reconstruction pipeline. The method builds containerized applications with standardized raw and image CMR data input/output in the open-source Magnetic Resonance Data format. In this study, deep learning models and algorithms from previous work (4D flow pre-processing, three-dimensional [3D] aorta segmentation, aorta velocity maps, quantification of aortic systolic peak velocities) were implemented in TensorFlow and executed within a containerized Python 3.6 environment on the magnetic resonance imaging (MRI) scanner, directly following the MRI data acquisition. All tasks were executed in-line using the MRI system's own computational resources. Analysis results were returned alongside the standard 4D flow CMR magnitude/phase images, available for review on-scanner console immediately after the CMR scan. In a study with 20 subjects (n = 10 patients with aortic disease, n = 10 healthy controls), FIRE performance was evaluated and compared to manual 4D flow analysis (reference standard).

resultsWe successfully implemented on-scanner automated 4D flow hemodynamic analysis on a 1.5T MRI system. Total on-scanner computation time for 4D flow analysis was 220 ± 35 s. Dice scores between manual vs deep learning processing (eddy current static tissue selection: 0.84 ± 0.14; noise voxel detection: 0.92 ± 0.04; aortic 3D segmentation 0.92 ± 0.06) demonstrated good to excellent pipeline performance. Bland-Altman analysis revealed a small but significant bias (0.04 m/s, p = 0.01) for peak systolic velocities between manual and deep learning processing with good limits of agreement (-0.10, 0.18 m/s) and a mean relative difference of 4% (0.8/20).

conclusionAn automated 4D flow processing workflow was successfully deployed for fully automated on-scanner hemodynamic analysis with good in-line vs human performance, indicating its potential for increased workflow efficiency.

Indexed as

AortaHemodynamicsImage Interpretation, Computer-AssistedMagnetic Resonance ImagingMagnetic Resonance Imaging, CinePerfusion ImagingAdultAgedAutomationBlood Flow VelocityCase-Control StudiesDeep LearningFemaleHumansMaleMiddle Aged4D flowAortaAutomated analysisDeep learningIn-line

Identifiers

PMID41232676
PMCPMC12766604

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.