Evidence map›Paper›PMID 41231970›Full record

ArticleApplied and environmental microbiology2025

Shotgun metagenomic mining reveals a new FAD-dependent D-lactate dehydrogenase in an isopod gut microbiome.

Catarina Coelho, André Taborda, Constança Lorena, Tomás Frazão, António Veríssimo, Patrícia T Borges, Vânia Brissos, Igor Tiago, Lígia O Martins

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Catarina CoelhoInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.ORCID 0000-0002-6760-367X
André TabordaInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
Constança LorenaInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
Tomás FrazãoInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.
António VeríssimoCentro de Ecologia Funcional, Departamento Ciências da Vida, Universidade de Coimbra, Coimbra, Portugal.
Patrícia T BorgesInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.ORCID 0000-0002-0602-819X
Vânia BrissosInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.ORCID 0000-0002-8171-0113
Igor TiagoCentro de Ecologia Funcional, Departamento Ciências da Vida, Universidade de Coimbra, Coimbra, Portugal.ORCID 0000-0002-9301-3585
Lígia O MartinsInstituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal.ORCID 0000-0003-0082-9591

Funding

Fundação para a Ciência e a Tecnologia 2020.07928Fundação para a Ciência e a Tecnologia 2022.00194.CEECINDFundação para a Ciência e a Tecnologia 2022.02027.PTDCFundação para a Ciência e a Tecnologia 2022.13872Fundação para a Ciência e a Tecnologia IF/01061/2014/CP1223/CT000Fundação para a Ciência e a Tecnologia LA/P/0087/2020Fundação para a Ciência e a Tecnologia SFRH/BD/148270/2019Fundação para a Ciência e a Tecnologia UIDB/04612/2020
6 · The paper itself

Abstract

Shotgun metagenomic sequencing has emerged as a powerful tool for exploring microbial diversity and uncovering genes encoding novel biocatalysts from complex environments. Here, we report the discovery and characterization of a new FAD-dependent D-lactate dehydrogenase (PdG-D-LDH) from the gut microbiome of the isopod IMPORTANCE: This study illustrates how metagenomics, structural biology, and computational tools can jointly drive the discovery of new enzymes with valuable biotechnological applications aligned with circular economic principles. The newly identified D-lactate dehydrogenase, PdG-D-LDH, exhibits thermostability, stereoselectivity, and high catalytic efficiency, providing new insights into the structure-function relationships of lactate-metabolizing enzymes.

Indexed as

Flavin-Adenine DinucleotideGastrointestinal MicrobiomeLactate DehydrogenasesAnimalsCatalytic DomainCrystallography, X-RayLactic AcidMetagenomeMetagenomicsMolecular Docking SimulationD-lactate dehydrogenaseFlavin-Adenine DinucleotideLactate DehydrogenasesLactic Acidbiocatalysismetagenomicsoxidoreductasespyruvate productionstructural biology

Identifiers

PMID41231970
PMCPMC12724367

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.