Evidence map›Paper›PMID 41231922›Full record

ArticlePLoS computational biology2025

The topology of synergy: Linking topological and information-theoretic approaches to higher-order interactions in complex systems.

Thomas F Varley, Pedro A M Mediano, Alice Patania, Josh Bongard

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Thomas F VarleyVermont Complex Systems Institute, University of Vermont, Burlington, Vermont, United States of America.ORCID 0000-0002-3317-9882
Pedro A M MedianoDepartment of Computing, Imperial College London, London, United Kingdom.ORCID 0000-0003-1789-5894
Alice PataniaVermont Complex Systems Institute, University of Vermont, Burlington, Vermont, United States of America.
Josh BongardVermont Complex Systems Institute, University of Vermont, Burlington, Vermont, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of irreducible higher-order interactions has become a core topic of study in complex systems, as they provide a formal scaffold around which to build a quantitative understanding of emergence and emergent properties. Two of the most well-developed frameworks, topological data analysis and multivariate information theory, aim to provide formal tools for identifying higher-order interactions in empirical data. Despite similar aims, however, these two approaches are built on markedly different mathematical foundations and have been developed largely in parallel - with limited interdisciplinary cross-talk between them. In this study, we present a head-to-head comparison of topological data analysis and information-theoretic approaches to describing higher-order interactions in multivariate data; with the goal of assessing the similarities, and differences, between how the frameworks define "higher-order structures." We begin with toy examples with known topologies (spheres, toroids, planes, and knots), before turning to more complex, naturalistic data: fMRI signals collected from the human brain. We find that intrinsic, higher-order synergistic information is associated with three-dimensional cavities in an embedded point cloud: shapes such as spheres and hollow toroids are synergy-dominated, regardless of how the data is rotated. In fMRI data, we find strong correlations between synergistic information and both the number and size of three-dimensional cavities. Furthermore, we find that dimensionality reduction techniques such as PCA preferentially represent higher-order redundancies, and largely fail to preserve both higher-order information and topological structure, suggesting that common manifold-based approaches to studying high-dimensional data are systematically failing to identify important features of the data. These results point towards the possibility of developing a rich theory of higher-order interactions that spans topological and information-theoretic approaches while simultaneously highlighting the profound limitations of more conventional methods.

Indexed as

Information TheoryAlgorithmsBrainComputational BiologyHumansMagnetic Resonance Imaging

Identifiers

PMID41231922
PMCPMC12643269

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.