Evidence map›Paper›PMID 41230780›Full record

ArticleBiotechnology and bioengineering2026

Characterizing Spatiotemporal Expansion of Pseudomonas aeruginosa Communities in Polymer and Mucin Gel Environments.

Morgan S Kim, Glynis L Kolling, Katharina Ribbeck, Shayn M Peirce, Jason A Papin, Roseanne M Ford

Abstract read
In one paragraph

Article in Biotechnology and bioengineering, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Morgan S KimDepartment of Chemical Engineering, School of Engineering and Applied Science, University of Virginia, Charlottesville, Virginia, USA.ORCID 0000-0001-5789-0057
Glynis L KollingDepartment of Biomedical Engineering, School of Engineering and Applied Science, University of Virginia, Charlottesville, Virginia, USA.
Katharina RibbeckDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.
Shayn M PeirceDepartment of Biomedical Engineering, School of Engineering and Applied Science, University of Virginia, Charlottesville, Virginia, USA.
Jason A PapinDepartment of Biomedical Engineering, School of Engineering and Applied Science, University of Virginia, Charlottesville, Virginia, USA.
Roseanne M FordDepartment of Chemical Engineering, School of Engineering and Applied Science, University of Virginia, Charlottesville, Virginia, USA.

Funding

Multi-scale model of microbial phenotype modulation by mucinsR01AI154242 · NIAID · UNIVERSITY OF VIRGINIA · PI FORD, ROSEANNE, PAPIN, JASON · 2020 to 2024
$3.1M
NIAID NIH HHS R01 AI154242This study was supported by the National Science Foundation (Grant 2234693) and the National Institutes of Health (Grant R01 AI154242).
6 · The paper itself

Abstract

Opportunistic colonization and recurring infection by Pseudomonas aeruginosa are substantial risks to lung functionality for people with underlying respiratory diseases such as cystic fibrosis and chronic obstructive pulmonary disease. The complex metabolic and phenotypic adaptations P. aeruginosa exhibits in response to its environmental conditions make relevant in vitro models of pathogenic populations crucial for identifying and evaluating effective antimicrobial targets. However, an extracellular component that is rarely integrated into these experimental platforms is a spatially extensive, semisolid gel medium representative of biological respiratory mucus layers that P. aeruginosa propagates through via active motility. In this investigation, we examine the applicability of swim plate assays, a qualitative methodology for measuring flagellar swimming motility, as an in vitro platform to study the spatiotemporal development of P. aeruginosa strain PA14. The propagation behavior of PA14 was tracked through time-lapse microscopy and studied under different agar gel compositions incorporating methylcellulose as well as native MUC5AC mucin. To aid quantitative characterization of PA14 population expansion, we paired this experimental workflow with a continuum model that would fit density profile fluctuations to changes in PA14 swimming motility and growth kinetics. We observed higher extracellular concentration and production of the phenazine pyocyanin when PA14 populations were grown in swim plate assays, supporting the emergence of heterogeneous growth environments within the microbial population. PA14 swim plates exhibited a significantly lower spreading velocity in gels containing 0.30% w/v MUC5AC, which model-to-experiment fitting results determined to be driven by reductions in PA14 swimming motility. Continuum model parameters additionally portrayed PA14 expansion in mucin gels, having cell growth outcompeting cell motility, which aligned with experimental assay observations of macrocolonies rapidly developing to high biomass density states. In contrast, PA14 did not show spreading velocity differences in gels containing 0.30% methylcellulose, and fitted parameters did not identify major growth and motility differences when compared to agar-only gels. Combined with the resource accessibility of this experimental platform, the swim plate assay as an in vitro model is well suited to investigations of pathogenic community dynamics in gel conditions over more extensive spatial and time scales.

Indexed as

MucinsPseudomonas aeruginosaGelsGelsMucinsbacterial motilitycontinuum modelinglung mucinPseudomonas aeruginosapyocyaninswim plate assay

Identifiers

PMID41230780
PMCPMC12779251

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.