Evidence map›Paper›PMID 41230740›Full record

ArticleAnnals of botany2026

Low genetic differentiation among morphologically distinct Cycas species informs the delineation of conservation management units.

James A R Clugston, Nicholas J Cuff, Caroline Chong, Michael Calonje, Kayla Claravall, Rachael V Gallagher, Murray Henwood, Gregory J Kenicer, Richard Milne, Markus Ruhsam

Abstract read
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Article in Annals of botany, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

James A R ClugstonHawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia.ORCID 0000-0002-3653-6953
Nicholas J CuffFlora & Fauna Division, Northern Territory Department of Lands, Planning and Environment, Palmerston, NT 0830, Australia.
Caroline ChongFlora & Fauna Division, Northern Territory Department of Lands, Planning and Environment, Palmerston, NT 0830, Australia.ORCID 0009-0008-2080-7350
Michael CalonjeMontgomery Botanical Center, Coral Gables, FL 33156-4242, USA.
Kayla ClaravallThe University of Sydney, School of Life and Environmental Sciences, Camperdown, NSW 2006, Australia.
Rachael V GallagherHawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia.ORCID 0000-0002-4680-8115
Murray HenwoodThe University of Sydney, School of Life and Environmental Sciences, Camperdown, NSW 2006, Australia.ORCID 0000-0002-7066-8191
Gregory J KenicerRoyal Botanic Garden Edinburgh, Edinburgh EH3 5LR, UK.
Richard MilneThe University of Edinburgh, College of Science and Engineering, School of Biological Sciences, Institute of Molecular Plant Sciences, Edinburgh EH9 3JN, UK.ORCID 0000-0001-7949-7539
Markus RuhsamRoyal Botanic Garden Edinburgh, Edinburgh EH3 5LR, UK.ORCID 0000-0002-8457-345X

Funding

Australian Flora FoundationBiotechnology and Biological Sciences Research Council 1429569
6 · The paper itself

Abstract

BACKGROUND AND

aimsCycads are the most threatened group of seed plants, with isolation and habitat fragmentation among the primary drivers of species decline. Understanding how genetic diversity is distributed across populations is crucial for informing conservation management and identifying genetically vulnerable populations that require conservation attention.

methodsHere we investigated the genetic diversity and structure of two endemic Australian species of significant conservation concern, Cycas armstrongii and C. maconochiei subsp. maconochiei. Two hundred and thirty-six individuals were sampled from 26 populations across their native ranges, including a presumed putative hybrid population (C. armstrongii × maconochiei), utilizing next-generation sequencing in the form of restriction site-associated DNA sequencing (RADseq). KEY

resultsOur results suggested low levels of genetic diversity in both taxa (C. armstrongii, He ≤ 0.038; C. maconochiei subsp. maconochiei, He ≤ 0.061) and no evidence for inbreeding (mean GIS -0.143 and -0.153, respectively). Analysis of molecular variance indicated minimal genetic differentiation between populations (2.41 %) and between taxa (1.81 %). However, pairwise FST values and the Mantel test revealed significant isolation by distance (r = 0.606, P < 0.0001). Discriminant analysis of principal components and popuatlion STRUCTURE analysis indicated admixture, between populations. Morphological traits, principal component and environmental analysis based on seven traits found significant differentiation in five characters, four of which were environmentally linked. The results showed no clear signal of interspecific hybridization for either taxon.

conclusionsThese findings indicate C. armstrongii and C. maconochiei subsp. maconochiei likely represent a morphologically variable species. In addition to updating the threat assessment, we recommend: (1) formally recognizing genetically depauperate or geographically isolated populations (e.g. Tiwi Islands) as conservation management units (CMUs); (2) establishing new ex situ assurance collections for at-risk CMUs; and (3) implementing assisted gene flow among genetically compatible populations to enhance adaptive potential. These actions will ensure conservation strategies are tailored to evolutionary and ecological units.

Indexed as

Conservation of Natural ResourcesCycasGenetic VariationAustraliaAustraliaconservation genomicsCycadsCycasgenomicsmanagement units

Identifiers

PMID41230740
PMCPMC12823241

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