Evidence map›Paper›PMID 41225513›Full record

ArticleBMC cancer2025

Synthetic lethality of EZH2 and DNMT Inhibition suppresses neuroblastoma proliferation via MYCN destabilization.

Yuki Endo, Ryuichi P Sugino, Hisanori Takenobu, Kyosuke Mukae, Ryu Okada, Yoshitaka Shinno, Masayuki Haruta, Shunpei Satoh, Jesmin Akter, Naoko Hattori and 6 more

Abstract read
In one paragraph

Article in BMC cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Targeting MYC-Driven Cancers: From Oncogenic Addiction to Therapeutic Vulnerability.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2026
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yuki EndoResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0002-5658-0142
Ryuichi P SuginoResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.
Hisanori TakenobuResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan. takenobu@saitama-pho.jp.ORCID http://orcid.org/0000-0001-7355-1565
Kyosuke MukaeResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0001-6411-2990
Ryu OkadaResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.
Yoshitaka ShinnoResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0001-7903-6230
Masayuki HarutaResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0002-1684-1483
Shunpei SatohResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0002-2892-7305
Jesmin AkterResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0002-4573-1603
Naoko HattoriDivision of Epigenomics, National Cancer Center Research Institute, 5-1-1, Tsukiji, Chuo-ku, Tokyo, 104-0045, Tokyo, Japan.ORCID http://orcid.org/0000-0002-0901-4869
Atsuko NakazawaDepartment of Clinical Research, Saitama Children's Medical Center, 1-2 Shintoshin, Chuo-ku, Saitama, 330-8777, Saitama, Japan.ORCID http://orcid.org/0000-0002-9008-4281
Toshikazu UshijimaDivision of Epigenomics, National Cancer Center Research Institute, 5-1-1, Tsukiji, Chuo-ku, Tokyo, 104-0045, Tokyo, Japan.ORCID http://orcid.org/0000-0003-3405-7817
Akira NakagawaraSaga Heavy Ion Medical Accelerator in Tosu, 3049 Koga-cho, Tosu, 841-007, Saga, Japan.ORCID http://orcid.org/0000-0003-3732-7763
Miki OhiraResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan.ORCID http://orcid.org/0000-0001-9105-1142
Masaki NioDepartment of Pediatric Surgery, Tohoku University Graduate School of Medicine, 1- 1, Seiryo-machi, Aoba-ku, Sendai, 980-8574, Miyagi, Japan.ORCID http://orcid.org/0000-0002-5862-1067
Takehiko KamijoResearch Institute for Clinical Oncology, Saitama Cancer Center, 818 Komuro, Ina, 362-0806, Saitama, Japan. tkamijo@saitama-pho.jp.ORCID http://orcid.org/0000-0003-4798-7546

Funding

Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science JP19H03625Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science JP20K08174Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science JP20K08269
6 · The paper itself

Abstract

backgroundEnhancer of Zeste Homolog 2 (EZH2) is highly expressed in various cancers and is thought to contribute to cancer malignancy through the methylation of lysine 27 on histone H3 (H3K27). Therefore, EZH2 is an H3K27 methylase and a target of cancer epigenetic treatments. Here, we investigated the effects and functions of a small-molecule EZH2 inhibitor (EZH2i) in aggressive neuroblastoma (NB).

methodsTo identify genes associated with the sensitivity to EZH2i, we classified NB cell lines into sensitive and resistant groups. EZH2i suppressed proliferation and induced cell cycle arrest in EZH2-sensitive NB cells. Transcriptome analysis revealed the de-repression of gene sets related to differentiation and cell cycle arrest. To investigate whether the gene repression in resistant cells is mediated by mechanisms other than H3K27 methylation, methylome analysis was conducted to evaluate the significance of DNA methylation. The effect of combined treatment with an EZH2 inhibitor and a DNA methylation inhibitor (DNMTi) on the growth of resistant NB cells was subsequently assessed both in vitro and in vivo, even in cells resistant to EZH2 inhibition.

resultsGenes such as TRIM63, VSTM2L, GPNMB, and TIMP3, which are de-repressed by EZH2is in sensitive cells. Furthermore, the promoters of some of these genes are hypermethylated in EZH2i-resistant cells and NB tissues. Additionally, the combined treatment with EZH2i and 5-aza-dC significantly inhibited cell proliferation with MYCN destabilization at protein level, c-MYC suppression at RNA and protein level and induced a robust differentiation phenotype.

conclusionsOur study identified gene expression profiles that can distinguish the responsiveness to EZH2i in neuroblastoma, and demonstrated that DNMTi not only de-repression in gene expression but also suppress neuroblastoma growth through inhibition of MYC. These results confirm the importance of epigenetic regulation in NB biology and provide information for developing epigenetic therapies for patients with advanced NB.

Indexed as

Enhancer of Zeste Homolog 2 ProteinNeuroblastomaN-Myc Proto-Oncogene ProteinAnimalsCell Line, TumorCell ProliferationDNA MethylationGene Expression Regulation, NeoplasticHumansMiceXenograft Model Antitumor AssaysEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanMYCN protein, humanN-Myc Proto-Oncogene Protein5-aza-dCDNMTEPZ-6438EZH2MYCNeuroblastoma

Identifiers

PMID41225513
PMCPMC12613573

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.