Evidence map›Paper›PMID 41224897›Full record

ArticleScientific reports2025

Genome-wide association study and KASP marker development for flour color in winter wheat.

Yousheng Tian, Pengpeng Liu, Xin Zhang, Yichen Liu, Dezhen Kong, Yingbin Nie, Hongjun Xu, Xinnian Han, Wei Sang, Weihua Li

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yousheng TianInstitute of Cotton Research, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China. tianyoushengzi@163.com.
Pengpeng LiuInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China.
Xin ZhangThe Key Laboratory of the Oasis Ecological Agriculture, College of Agriculture, Shihezi University, Shihezi, 832003, China.
Yichen LiuThe Key Laboratory of the Oasis Ecological Agriculture, College of Agriculture, Shihezi University, Shihezi, 832003, China.
Dezhen KongInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China.
Yingbin NieInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China.
Hongjun XuInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China.
Xinnian HanInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China.
Wei SangInstitute of Crop Science, Xinjiang Academy of Agriculture and Reclamation Sciences, Shihezi, 832000, China. swlw_ren@126.com.
Weihua LiThe Key Laboratory of the Oasis Ecological Agriculture, College of Agriculture, Shihezi University, Shihezi, 832003, China. lwh_agr@shzu.edu.cn.

Funding

the Key Industrial Innovation Technology Projects in Southern Xinjiang of the Xinjiang Production and Construction Corps 2022DB013
6 · The paper itself

Abstract

Flour color influences the quality of end-use products of common wheat (Triticum aestivum L.). To analyze the genetic basis of flour color, the flour brightness (FL*), red-green level (Fa*), yellow-blue level (Fb*), and whiteness (W) of 341 winter wheat materials grown during the 2019-2020 years and 2020-2021 years in Emin and Qitai were measured. A genome-wide association study was conducted using a wheat 40 K breeding chip with the MLM model. The coefficient of variation and generalized heritability of wheat flour color traits ranged from 0.62% to 22.23% and 55.52% to 83.48%, respectively. There were strong correlations across the flour color traits. GWAS identified 20 significant and stable SNP markers distributed across 16 loci, including 1 for FL* located on chromosome 5D; 6 for Fa*, located on chromosomes 1 A, 5 A, 1B (2), 6B, and 4D; 6 for Fb*, located on chromosomes 2 A (2), 4 A, 4B, 6B, and 5D; and 3 for W, located on chromosomes 2 A, 4 A, and 5D. Two KASP markers were developed for Fa*, which exhibited good genotype and significant phenotypic differences among materials with different genotypes. Seven candidate genes that may affect flour color during grain development were screened, including TraesCS5D02G01340.1, TraesCS5D02G013100, and TraesCS5D02G014300.1 on the 5D chromosome may simultaneously influence W, FL*, and Fa*, TraesCS1B02G269100.1 and TraesCS1B02G269500.1 on the 1B chromosome may impact Fa*, while TraesCS4A02G307200 and TraesCS6B02G034100.1 on the 4 A and 6B chromosomes may affect Fb*.The results provide useful information to enhance the color quality of wheat flour in wheat.

Indexed as

FlourGenome-Wide Association StudyTriticumChromosome MappingChromosomes, PlantColorGenetic MarkersGenotypePhenotypePigmentationPolymorphism, Single NucleotideQuantitative Trait LociGenetic MarkersFlour colorGWASKASP markersWheat

Identifiers

PMID41224897
PMCPMC12612271

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.