Evidence map›Paper›PMID 41224877›Full record

ArticleScientific data2025

A chromosome-level genome assembly of the flat mite Brevipalpus obovatus.

Hu-Die He, Lang Liang, Dao-Chao Jin, Tian-Ci Yi

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hu-Die He *Institute of Entomology, Guizhou University, and The Provincial Key Laboratory for Plant Pest Management of Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agricultural and Rural Affairs, Guiyang, 550025, P. R. China.ORCID 0009-0003-5441-8023
Lang Liang *Institute of Entomology, Guizhou University, and The Provincial Key Laboratory for Plant Pest Management of Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agricultural and Rural Affairs, Guiyang, 550025, P. R. China.
Dao-Chao JinInstitute of Entomology, Guizhou University, and The Provincial Key Laboratory for Plant Pest Management of Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agricultural and Rural Affairs, Guiyang, 550025, P. R. China. dcjin@gzu.edu.cn.
Tian-Ci YiInstitute of Entomology, Guizhou University, and The Provincial Key Laboratory for Plant Pest Management of Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agricultural and Rural Affairs, Guiyang, 550025, P. R. China. tcyi@gzu.edu.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32160118National Natural Science Foundation of China (National Science Foundation of China) 32470478
6 · The paper itself

Abstract

As members of the Tenuipalpidae family, Brevipalpus mites have emerged as significant research subjects in agriculture and horticulture due to their polyphagous nature, high reproductive potential, and ability to transmit plant viruses. However, the evolutionary understanding of this taxon remains constrained by the absence of high-quality chromosomal genome data. In this study, we present the first chromosome-level genome assembly of B. obovatus, achieved through an integrative approach utilizing Illumina, Nanopore, PacBio, and Hi-C sequencing technologies. The final genome assembly comprises 67.28 Mb in length with contig and scaffold N50 values of 33.74 Mb and 33.74 Mb, respectively. The chromosome-scale assembly (five contigs anchored to two chromosomes) showed 87.4% BUSCO completeness (arachnida_odb12, n = 1,123). We annotated 9,193 protein-coding genes (89.1% BUSCO completeness), including 8,756 functionally annotated genes, and identified repetitive sequences accounting for 12.2%. This genome provides a valuable resource for advancing the understanding of flat mite genetics and evolution.

Indexed as

ChromosomesGenomeMitesAnimalsMolecular Sequence Annotation

Identifiers

PMID41224877
PMCPMC12612070

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.