Evidence map›Paper›PMID 41222223›Full record

ArticleJournal of medicinal chemistry2025

Mechanistic Characterization of a Small Molecule as a Direct NLRP3 Inhibitor via Binding to the NACHT Domain.

Yiming Xu, Hallie Blevins, Savannah Biby, Jannatun N Namme, Kun Zhang, Renfeng Li, Shijun Zhang

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yiming XuDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Hallie BlevinsDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Savannah BibyDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia 23298, United States.ORCID 0009-0004-4063-9682
Jannatun N NammeDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Kun ZhangPhilips Institute for Oral Health Research, School of Dentistry, Virginia Commonwealth University, Richmond, Virginia 23298, United States.
Renfeng LiDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania 15232, United States.
Shijun ZhangDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, Virginia 23298, United States.ORCID 0000-0001-9732-5925

Funding

Development of novel NLRP3 inflammasome inhibitors for intervening in Alzheimer's diseaseU01AG076481 · NIA · VIRGINIA COMMONWEALTH UNIVERSITY · PI Shijun Zhang · 2022 to 2026
$7.5M
The Role of PIAS1 in EBV BiologyR01AI141410 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI LI, RENFENG · 2019 to 2023
$1.9M
Probing neuroinflammation in Alzheimer's disease with NLRP3 PET radiotracersRF1AG076912 · NIA · VIRGINIA COMMONWEALTH UNIVERSITY · PI ZHANG, SHIJUN · 2023 to 2023
$1.9M
NIAID NIH HHS R01 AI141410NIA NIH HHS RF1 AG076912NIA NIH HHS U01 AG076481
6 · The paper itself

Abstract

The NLRP3 inflammasome has recently emerged as a viable drug target, and small-molecule inhibitors of this protein complex are being actively tested in preclinical disease models. However, the mechanisms of action for the majority of these compounds remain unclear. Our recent medicinal chemistry campaign led to the discovery of several potent lead NLRP3 inhibitors from a distinct chemical scaffold. Herein, further characterization using biophysical, biochemical, chemical biology, and molecular biology approaches of one of the lead inhibitors revealed direct binding to the NACHT domain of the NLRP3 protein. The studies also suggested potentially multiple binding sites within the NACHT domain that can be targeted by different small-molecule inhibitors. Furthermore, an activity-based probe with high labeling efficacy was developed and can serve as a valuable tool to contribute to ongoing efforts in understanding NLRP3 biology and in developing NLRP3-targeted therapies for various diseases.

Indexed as

NLR Family, Pyrin Domain-Containing 3 ProteinSmall Molecule LibrariesAnimalsBinding SitesHumansInflammasomesProtein BindingProtein DomainsStructure-Activity RelationshipInflammasomesNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanSmall Molecule Libraries

Identifiers

PMID41222223
PMCPMC12670425

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.