Evidence map›Paper›PMID 41219193›Full record

SynthesisNature communications2025

Deciphering cell-type-and temporally specific matrisome expression signatures in human cortical development and neurodevelopmental disorders via scRNA-seq meta-analysis.

Do Hyeon Gim, Muhammad Z K Assir, Olivia Soper, Paul A Fowler, Michael D Morgan, Daniel A Berg, Eunchai Kang

Abstract readMeta-Analysis
In one paragraph

Synthesis in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Do Hyeon GimInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0009-0008-0907-8310
Muhammad Z K AssirInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0000-0002-8940-9747
Olivia SoperInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0009-0007-1845-4341
Paul A FowlerInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0000-0002-4831-9075
Michael D MorganInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK.ORCID http://orcid.org/0000-0003-0757-0711
Daniel A BergInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK. daniel.berg@abdn.ac.uk.ORCID http://orcid.org/0000-0001-9595-2052
Eunchai KangInstitute of Medical Sciences, School of Medicine, Medical Sciences and Nutrition, University of Aberdeen, Aberdeen, UK. eunchai.kang@abdn.ac.uk.ORCID http://orcid.org/0000-0001-6884-622X

Funding

Academy of Medical Sciences SBF007\100169EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 722634Humane Research Trust (HRT) Les Rhoades PhD scholarshipRCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/W008068/1RCUK | Medical Research Council (MRC) MR/L010011/1RCUK | Medical Research Council (MRC) MR/P011535/1RCUK | Medical Research Council (MRC) MR/Z506138/1
6 · The paper itself

Abstract

Human cortical development is a complex process involving the proliferation, differentiation, and migration of progenitor cells, all coordinated within a dynamic extracellular matrix (ECM). ECM plays a crucial role in guiding these processes, yet its specific contributions and the implications of its dysregulation in neurodevelopmental disorders (NDDs) remain underexplored. In this study, we conducted a meta-analysis of single-cell RNA sequencing (scRNA-seq) data from 37 donors, gestational weeks 8 to 26, across six independent studies to elucidate cell-type-specific matrisome gene expression signatures and their dynamics in the developing human cortex. Our analysis identified distinct matrisome gene signatures across various cell types, with significant temporal changes during cortical development. Notably, a substantial proportion of matrisome genes are associated with NDDs, exhibiting cell-type, temporal, and disease specificity. These findings highlight the critical role of cell-type-specific matrisome regulation in cortical development and its potential involvement in NDD pathogenesis. This study provides a comprehensive map of cell-type-specific matrisome signatures in the developing human cortex and highlights the importance of ECM in both normal development and the pathogenesis of NDDs.

Indexed as

Cerebral CortexNeurodevelopmental DisordersExtracellular MatrixFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalHumansRNA-SeqSequence Analysis, RNASingle-Cell AnalysisSingle-Cell Gene Expression AnalysisTranscriptome

Identifiers

PMID41219193
PMCPMC12606316

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.