Evidence map›Paper›PMID 41218058›Full record

ArticlePLoS computational biology2025

Automated C. elegans behavior analysis via deep learning-based detection and tracking.

Xiaoke Liu, Jianming Liu, Wenjie Teng, Yuzhong Peng, Boao Li, Xiaoqing Han, Jing Huo

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Advances in drug addiction research usingFrontiers in cell and developmental biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoke LiuSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.
Jianming LiuSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.
Wenjie TengSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.
Yuzhong PengSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.
Boao LiSchool of Life Science and Technology, Shandong Second Medical University, Weifang, Shandong, China.
Xiaoqing HanSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.ORCID 0009-0002-7206-0005
Jing HuoSchool of Basic Medical Sciences, Shandong Second Medical University, Weifang, Shandong, China.

Funding

Natural Science Foundation of Shandong Province, China
6 · The paper itself

Abstract

As a well-established and extensively utilized model organism, Caenorhabditis elegans (C. elegans) serves as a crucial platform for investigating behavioral regulation mechanisms and their biological significance. However, manually tracking the locomotor behavior of large numbers of C. elegans is both cumbersome and inefficient. To address the above challenges, we innovatively propose an automated approach for analyzing C. elegans behavior through deep learning-based detection and tracking. Building upon existing research, we developed an enhanced worm detection framework that integrates YOLOv8 with ByteTrack, enabling real-time, precise tracking of multiple worms. Based on the tracking results, we further established an automated high-throughput method for quantitative analysis of multiple movement parameters, including locomotion velocity, body bending angle, and roll frequency, thereby laying a robust foundation for high-precision, automated analysis of complex worm behaviors. including movement speed, body bending angle, and roll frequency, thereby laying a robust foundation for high-precision, automated analysis of complex worm behaviors. Comparative evaluations demonstrate that the proposed enhanced C. elegans detection framework outperforms existing methods, achieving a precision of 99.5%, recall of 98.7%, and mAP50 of 99.6%, with a processing speed of 153 frames per second (FPS). The established framework for worm detection, tracking, and automated behavioral analysis developed in this study delivers superior detection and tracking accuracy while enhancing tracking continuity and robustness. Unlike traditional labor-intensive measurement approaches, our framework supports simultaneous tracking of multiple worms while maintaining automated extraction of various behavioral parameters with high precision. Furthermore, our approach advances the standardization of C. elegans behavioral parameter analysis, which can analyze the behavioral data of multiple worms at the same time, significantly improving the experimental throughput and providing an efficient tool for drug screening, gene function research and other fields.

Indexed as

Behavior, AnimalCaenorhabditis elegansDeep LearningImage Processing, Computer-AssistedAnimalsComputational BiologyLocomotion

Identifiers

PMID41218058
PMCPMC12626320

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.