Evidence map›Paper›PMID 41213977›Full record

ArticleScientific data2025

Annotated 3D Point Cloud Dataset of Broad-Leaf Legumes Captured by High-Throughput Phenotyping Platform.

Alexander Galba, Jan Masner, Jana Kholová, Serkan Kartal, Michal Stočes, Vojtěch Mikeš, Pavel Šimek, Štěpánka Prokopová, René Fiala, Thorsten Karrer and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexander GalbaDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.ORCID 0000-0002-5926-0785
Jan MasnerDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic. masner@pef.czu.cz.ORCID 0000-0003-4593-2306
Jana KholováDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.ORCID 0000-0001-7133-1382
Serkan KartalDepartment of Computer Engineering, Çukurova University, 01380, Adana, Türkiye.
Michal StočesDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.ORCID 0000-0001-7128-1071
Vojtěch MikešDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.ORCID 0009-0006-6456-056X
Pavel ŠimekDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.ORCID 0000-0001-9244-1476
Štěpánka ProkopováDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.
René FialaDepartment of Information Technologies, Faculty of Economics and Management, Czech University of Life Sciences, Kamýcká 129, Prague, 165 00, Czech Republic.
Thorsten KarrerPhenospex B. V., Jan Campertstraat 11, 6416 SG, Heerlen, The Netherlands.
András TóthPhenospex B. V., Jan Campertstraat 11, 6416 SG, Heerlen, The Netherlands.

Funding

Czech University of Life Sciences Prague | Provozně Ekonomická Fakulta, Česká Zemědělská Univerzita v Praze (Faculty of Economics and Management, Czech University of Life Sciences Prague) 2023B0005
6 · The paper itself

Abstract

This data descriptor presents novel, annotated 3D point cloud plant scans generated by a high-throughput phenotyping platform (LeasyScan, ICRISAT, India). It focuses on broad-leaf legume species (mungbean, common bean, cowpea, and lima bean). The dataset, generated by PlantEye(R) F600 technology, captures multispectral 3D scans of plant canopies. It includes 223 scans, providing detailed organ-level segmentation annotations for embryonic leaves, leaves, petioles, stems, and whole plants. The dataset fills a critical gap in plant phenomics research by offering a base of annotated data to support AI model development efforts in 3D computer vision. Data preprocessing, annotation procedures, and potential applications in crop research disciplines are further discussed. The dataset, preprocessing code, annotations, and a MIAPPE-compliant data sheet are also presented via the GitHub repository for further updates and expansion.

Indexed as

FabaceaePlant LeavesImaging, Three-DimensionalPhenomicsPhenotype

Identifiers

PMID41213977
PMCPMC12603112

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.