Evidence map›Paper›PMID 41212034›Full record

ArticleJournal of virology2025

Glycan-reactive antibodies isolated from human HIV-1 vaccine trial participants show broad pathogen cross-reactivity.

Parker J Jamieson, Xiaoying Shen, Alexandra A Abu-Shmais, Perry T Wasdin, Katarzyna Janowska, Robert J Edwards, Garrett Scapellato, Maurice Bukenya, Lindsay E Bass, Simone I Richardson and 32 more

Registry-linked trialAbstract readClinical Trial, Phase I
In one paragraph

Article in Journal of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03409276 (A Phase 1 Clinical Trial to Evaluate the Safety and Immunogenicity of Polyvalent Env), which is not on this map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03409276 phase1completednot on this map

A Phase 1 Clinical Trial to Evaluate the Safety and Immunogenicity of Polyvalent Env (A,B,C,A/E) / Gag (C) DNA and gp120 (A,B,C,A/E) Protein/GLA-SE HIV-1 Vaccines (PDPHV-201401) as a Prime-boost Regimen or Co-administered in Repeated Doses, in Healthy, HIV-1-Uninfected Adult Participants

TypeinterventionalSponsorNational Institute of Allergy and Infectious Diseases (NIAID)Ran2018 to 2020Enrolled60ConditionsHIV InfectionsArmsenv (A,B,C,A/E)/gag (C) DNA Vaccine, gp120 (A,B,C,A/E) Protein Vaccine, Placebo, GLA-SE adjuvant
3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Canonical Antibodies Adopt Distinct Binding Modes to Recognize Viral Glycan Shields.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

42 authors.

Parker J JamiesonVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0001-8992-6747
Xiaoying ShenDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.ORCID 0000-0002-8387-3952
Alexandra A Abu-ShmaisVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0001-5514-3277
Perry T WasdinVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Katarzyna JanowskaDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Robert J EdwardsDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Garrett ScapellatoDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Maurice BukenyaDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, North Carolina, USA.
Lindsay E BassDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Simone I RichardsonSouth African Medical Research Council Antibody Immunity Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.ORCID 0000-0001-7678-2609
Nelia P ManamelaSouth African Medical Research Council Antibody Immunity Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Shuying LiuWorcester HIV Vaccine, Worcester, Massachusetts, USA.
Maggie BarrDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Lindsey AdamsRagon Institute of Mass General, MIT, and Harvard, Cambridge, Massachusetts, USA.
Cristina Paola Velez-CastroRagon Institute of Mass General, MIT, and Harvard, Cambridge, Massachusetts, USA.
Caitlin McCarthyRagon Institute of Mass General, MIT, and Harvard, Cambridge, Massachusetts, USA.
Caroline A AlexanderRagon Institute of Mass General, MIT, and Harvard, Cambridge, Massachusetts, USA.ORCID 0009-0006-9690-2296
Rebecca A GillespieVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA, Bethesda, Maryland, USA.
Jessica MimmsDivision of Infectious Diseases, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Naveenchandra SuryadevaraVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Ty A SornbergerVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Seth J ZostVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Robert ParksDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Shelby FlahertyDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
Alexis K JankeVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Bethany N HowardVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Yukthi P SureshVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Ruth M RuprechtTexas Biomedical Research Institute and Southwest National Primate Research Center, San Antonio, Texas, USA.
James E CroweVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0002-0049-1079
Robert H CarnahanVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Justin R BaileyDivision of Infectious Diseases, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Masaru KanekiyoVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA, Bethesda, Maryland, USA.
Daniel LingwoodRagon Institute of Mass General, MIT, and Harvard, Cambridge, Massachusetts, USA.
Barton F HaynesDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.ORCID 0000-0002-7643-9023
Penny L MooreSouth African Medical Research Council Antibody Immunity Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.
Rachel H BonamiDepartment of Pathology, Microbiology and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0001-7575-6943
Georgia D TomarasDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, North Carolina, USA.
Priyamvada ArcharyaDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
David C MontefioriDepartment of Surgery, Duke University School of Medicine, Durham, North Carolina, USA.
Spyros A KalamsInfectious Diseases Unit, Department of Internal Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0003-0098-7995
Shan LuWorcester HIV Vaccine, Worcester, Massachusetts, USA.
Ivelin S GeorgievVanderbilt Center for Antibody Therapeutics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0002-6312-7696

Funding

Nonhuman primate studies for development of a prototype HIV vaccine that induces broadly neutralizing antibodiesUM1AI144371 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2019 to 2025
$190.4M
Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ARTHUR Y KIM · 2004 to 2026
$94.4M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
Project 3 - Dynamics of latent HIV-1 reservoirs: High resolution antigenic mapping and strategies to block reboundU54AI170752 · NIAID · DUKE UNIVERSITY · PI Priyamvada Acharya · 2022 to 2026
$32.0M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI John Koethe · 2015 to 2026
$27.5M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI David J. Calkins · 1989 to 2026
$19.6M
Physical Resources CoreP01AI120756 · NIAID · DUKE UNIVERSITY · PI MOODY, MICHAEL ANTHONY · 2016 to 2020
$17.1M
Vanderbilt Mouse Metabolic Physiology CenterU24DK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2001 to 2015
$14.9M
NCI NIH HHS P30 CA068485NCRR NIH HHS G20 RR030956NCRR NIH HHS UL1 RR024975NEI NIH HHS P30 EY008126NIAID NIH HHS 75N93025C00006NIAID NIH HHS HHSN272201800004CNIAID NIH HHS P01 AI120756NIAID NIH HHS P30 AI060354NIAID NIH HHS P30 AI110527NIAID NIH HHS R01 AI127469NIAID NIH HHS R01 AI146785NIAID NIH HHS R01 AI152693NIAID NIH HHS R01 AI153098NIAID NIH HHS R01 AI155447NIAID NIH HHS R01 AI165147NIAID NIH HHS R01 AI175245NIAID NIH HHS U54 AI170752NIAID NIH HHS UM1 AI144371NIDDK NIH HHS F31 DK141224NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK131070NIDDK NIH HHS U24 DK059637NIGMS NIH HHS R24 GM137763NIH HHS P51 OD011133NIH HHS S10 OD021630Wellcome Trust
6 · The paper itself

Abstract

HIV-1 continues to pose a significant global health challenge, requiring ongoing research into effective prevention and treatment strategies. Understanding the B-cell repertoire that can be engaged upon vaccination in humans is crucial for the development of future preventive vaccines. In this study, peripheral blood mononuclear cells from HIV-negative participants in the multivalent HVTN124 human HIV-1 vaccine clinical trial were interrogated for HIV-reactive B cells using LIBRA-seq, a high-throughput B-cell mapping technology. We report the discovery of glycan-reactive antibodies, with one of these being capable of neutralizing diverse heterologous HIV-1 virus strains. Furthermore, isolated antibodies showed broad cross-reactivity against antigens from a variety of other pathogens. The emerging class of glycan-reactive virus-neutralizing antibodies with exceptional breadth of pathogen cross-reactivity may present an effective target for vaccination at the population level. IMPORTANCE: Understanding how the human immune system recognizes and combats viruses is crucial for developing better vaccines and treatments. Here, through characterization of the B-cell receptor repertoires of participants in HVTN124, a multivalent HIV-1 vaccine human clinical trial, we discovered antibodies that recognize sugar molecules (glycans) on antigens from a range of unrelated viral families. In addition to their binding breadth, these antibodies can also neutralize multiple diverse strains of HIV-1. Our findings reveal an emerging and underappreciated mechanism for antibodies to counteract virus infection, potentially opening doors for developing vaccines that preferentially elicit glycan-reactive antibody species to broadly protect against different viruses.This study is registered with ClinicalTrials.gov as NCT03409276.

Indexed as

AIDS VaccinesHIV-1HIV AntibodiesHIV InfectionsPolysaccharidesAntibodies, NeutralizingB-LymphocytesCross ReactionsHumansLeukocytes, MononuclearAIDS VaccinesAntibodies, NeutralizingHIV AntibodiesPolysaccharidesbNAbcross-reactiveFab-dimerizedglycan-reactivehepatitis C virushuman clinical trialshuman immunodeficiency virusLIBRA-seqmonoclonal antibodiesvaccines

Identifiers

PMID41212034
PMCPMC12724313

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.