Evidence map›Paper›PMID 41206963›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2025

CD4+ mucosal-associated invariant T cells express highly diverse T cell receptors.

Rimanpreet Kaur, Danielle Xie, Atul Pradhan, Nezar Mehanna, Kelin Li, Jeffrey Aubé, Barbara Rosati, David Carlson, Christina Y Lee, Charles Kyriakos Vorkas

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

  • Update of
    CD42025
5 · Who and what money

Authors and funding

10 authors.

Rimanpreet KaurDivision of Infectious Diseases, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
Danielle XieDivision of Infectious Diseases, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
Atul PradhanDivision of Infectious Diseases, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
Nezar MehannaDivision of Infectious Diseases, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
Kelin LiDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Jeffrey AubéDivision of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Barbara RosatiDepartment of Physiology and Biophysics, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
David CarlsonInstitute for Advanced Computational Science, Stony Brook University, Stony Brook, NY, USA.
Christina Y LeeDivision of Hematology and Medical Oncology, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.
Charles Kyriakos VorkasDivision of Infectious Diseases, Department of Medicine, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, USA.ORCID 0000-0003-4952-7041

Funding

The role of Mucosal-associated invariant T (MAIT) cells during the innate immune response to Mycobacterium tuberculosisK08AI132739 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI VORKAS, CHARLES KYRIAKOS · 2018 to 2022
$921k
Identification of Mycobacterium tuberculosis-derived metabolites acting as ligands for MR1-restricted T cells.R21AI171578 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI VORKAS, CHARLES KYRIAKOS · 2023 to 2024
$468k
National Institute of Allergy and Infectious Diseases K08AI132739National Institute of Allergy and Infectious Diseases K08AI132739 (principal investigator: C.K.V.)National Institute of Allergy and Infectious Diseases R21AI171578National Institute of Allergy and Infectious Diseases R21AI171578 (principal investigator: C.K.V.)National Institute of Allergy and Infectious Diseases R21AI83259National Institute of Allergy and Infectious Diseases R21AI83259 (principal investigator: Seeliger, co-investigator: C.K.V.)NIAID NIH HHS K08 AI132739NIAID NIH HHS R21 AI171578
6 · The paper itself

Abstract

Mucosal-associated invariant T (MAIT) cells are highly conserved innate-like T cells in mammals recognized for their high baseline frequency in human blood and cytotoxic effector functions during infectious diseases, autoimmunity, and cancer. While the majority of these cells in humans express a conserved CD8αβ+ TRAV1-2 T cell receptor (TCR) recognizing microbially derived vitamin B2 intermediates presented by the evolutionarily conserved major histocompatibility complex class I-related molecule, MR1, there is an emerging appreciation for diverse MAIT cell subsets that possess distinct functions including CD4+ MAIT cells that remain underexplored. In this study, we adopted an unbiased single-cell TCR-sequencing approach in MR1-5-OP-RU-tetramer-reactive T cells. We discovered that CD4+ MAIT cells are enriched with highly diverse TRAV1-2- TCRs. To specifically characterize this TCR repertoire, we analyzed VDJ sequences across 2 datasets and identified distinct TCR usage among CD4+ MAIT cells including TRAV21, TRAV8 (TRAV8-1, TRAV8-2, TRAV8-3), and TRAV12 families (TRAV12-2, TRAV12-3), as well as more variable J segment, CDR3α, and TRBV sequences. TRAV1-2- MAIT cell TCRs were also enriched after in vitro culture with interleukin-2 and Mycobacterium tuberculosis. These results indicate that mature human CD4+ MAIT cells adopt distinct TCR usage from the canonical TRAV1-2+ CD8+ subset and suggest that alternative MR1 ligands in addition to riboflavin intermediates may select for them.

Indexed as

CD4-Positive T-LymphocytesMucosal-Associated Invariant T CellsReceptors, Antigen, T-CellHistocompatibility Antigens Class IHumansMinor Histocompatibility AntigensMycobacterium tuberculosisHistocompatibility Antigens Class IMinor Histocompatibility AntigensMR1 protein, humanReceptors, Antigen, T-CellCD4+ MAIT cellsCITE-Seqinnate lymphocytessingle cell genomicsTCR diversity

Identifiers

PMID41206963
PMCPMC12726071

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.