Evidence map›Paper›PMID 41206820›Full record

ArticleAntonie van Leeuwenhoek2025

Characterisation of probiotic potential and whole genome analysis of lactic acid bacteria isolated from Tetragonula Laeviceps and Heterotrigona Itama bee bread.

Ema Damayanti, Mastari Ayu Anggraeni, Tsania Taskia Nabila, Amrizal Shalahudin, Yeyen Prestyaning Wanita, Lusty Istiqomah, Rofiq Sunaryanto, Teguh Wahyono, Nur Fitrianto, Riri Rimbun Anggih Chaidir

Abstract read
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In one paragraph

Article in Antonie van Leeuwenhoek, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Host-AdaptedMicroorganisms · 2026
    Article
  2. Genomic, metabolomic, and functional properties of probiotic lactic acid bacteria isolated from Indonesian stingless bee honey.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ema DamayantiResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia. emad001@brin.go.id.ORCID http://orcid.org/0000-0002-4017-0499
Mastari Ayu AnggraeniStudy Program of Biotechnology, Faculty of Natural Sciences and Technology, Technology Sumbara University, Sumbawa Besar, 84371, West Nusa Tenggara, Indonesia.ORCID http://orcid.org/0009-0000-6481-2807
Tsania Taskia NabilaStudy Program of Biotechnology, Graduate School, Universitas Gadjah Mada, Yogyakarta, 55281, Indonesia.ORCID http://orcid.org/0000-0001-7264-7485
Amrizal ShalahudinStudy Program of Biology, Faculty of Sciences and Technology, Universitas Islam Indonesia (UIN) Sunan Kalijaga, Yogyakarta, 55281, Indonesia.ORCID http://orcid.org/0009-0000-4092-8012
Yeyen Prestyaning WanitaResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia.ORCID http://orcid.org/0000-0002-3431-0504
Lusty IstiqomahResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia.ORCID http://orcid.org/0000-0002-3448-9874
Rofiq SunaryantoResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia.ORCID http://orcid.org/0000-0002-5035-4195
Teguh WahyonoResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia.ORCID http://orcid.org/0000-0002-5433-5952
Nur FitriantoResearch Center for Food Technology and Processing, National Research and Innovation Agency (BRIN), Yogyakarta, 55861, Gunungkidul, Indonesia.ORCID http://orcid.org/0000-0002-6292-3834
Riri Rimbun Anggih ChaidirStudy Program of Biotechnology, Faculty of Natural Sciences and Technology, Technology Sumbara University, Sumbawa Besar, 84371, West Nusa Tenggara, Indonesia.ORCID http://orcid.org/0000-0003-2751-2877

Funding

Research Organization of Life Sciences and Environment, National Research and Innovation Agency 1/III.5/HK/2024
6 · The paper itself

Abstract

Stingless bee bread is a fermented bee pollen product containing beneficial lactic acid bacteria (LAB) with potential probiotic properties. This study aimed to characterise the probiotic potential and perform whole genome analysis of LAB isolated from the bee bread of two Indonesian stingless bee species, Tetragonula laeviceps and Heterotrigona itama. Four LAB isolates (BBAT2, BBST20, BBAH2, and BBAH7) were chosen for their ability to combat harmful bacteria, followed by molecular characterisation based on 16S rRNA gene sequence analysis, and identified as Lacticaseibacillus rhamnosus (BBAT2, BBAH2, and BBAH7) and Fructobacillus fructosus (BBST20). Probiotic properties of these isolates were further characterised by digestive tract simulations. Two selected LAB isolates with the highest viability under acidic conditions (80.96-102.10%), gastric juice (80.56-97.92) and bile salt (69.78-102.0%) were L. rhamnosus BBAH2 and BBAH7 followed whole genome sequence (WGS) analysis using PromethION Oxford Nano Technology (ONT). WGS revealed that Lacticaseibacillus rhamnosus BBAH2 (2,987,481 bp) and BBAH7 (2,987,282 bp) belong to the strain Lacticaseibacillus rhamnosus strain JCM 1136 (2,934,834 bp) with an average nucleotide identity (ANI) and ANI based on BLAST + (ANIb) values of 99.88-99 and 99.97% (> 95%), respectively. Genome mining analysis using antiSMASH version 8 beta 1 revealed two regions of biosynthesis gene clusters (T3PKS and RiPP-like), and BAGEL4 revealed one bacteriocin region (carnocin class). The results demonstrated that LAB isolates from stingless bee bread possess desirable probiotic properties and potential genomic characteristics. These strains provide a foundation for the further exploration of their applications in functional foods and nutraceuticals.

Indexed as

Genome, BacterialLactobacillalesProbioticsAnimalsBeesPhylogenyPollenRNA, Ribosomal, 16SWhole Genome SequencingRNA, Ribosomal, 16SBee breadGenome analysisLactic acid bacteriaProbioticStingless bee

Identifiers

PMID41206820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.