Evidence map›Paper›PMID 41204749›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2026

Predicting MammaPrint Recurrence Risk from Breast Cancer Pathological Images Using a Weakly Supervised Transformer.

Chaoyang Yan, Linwei Li, Xiaolong Qian, Yang Ou, Zhidong Huang, Zhihan Ruan, Wenting Xiang, Hong Liu, Jian Liu

Abstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chaoyang YanCentre for Bioinformatics and Intelligent Medicine, College of Computer Science, Nankai University, Tianjin, 300350, China.ORCID https://orcid.org/0000-0003-2061-6040
Linwei LiThe Second Surgical Department of Breast Cancer, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Tianjin, 300060, China.
Xiaolong QianTianjin's Clinical Research Center for Cancer, Tianjin, 300060, China.
Yang OuThe Second Surgical Department of Breast Cancer, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Tianjin, 300060, China.
Zhidong HuangThe Second Surgical Department of Breast Cancer, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Tianjin, 300060, China.
Zhihan RuanCentre for Bioinformatics and Intelligent Medicine, College of Computer Science, Nankai University, Tianjin, 300350, China.
Wenting XiangCentre for Bioinformatics and Intelligent Medicine, College of Computer Science, Nankai University, Tianjin, 300350, China.
Hong LiuThe Second Surgical Department of Breast Cancer, Tianjin Medical University Cancer Institute & Hospital, National Clinical Research Center for Cancer, Tianjin, 300060, China.
Jian LiuState Key Laboratory of Medicinal Chemical Biology, College of Computer Science, Nankai University, Tianjin, 300350, China.ORCID https://orcid.org/0000-0001-5516-0157

Funding

National Key Research and Development Program of China 2020YFA0908700National Key Research and Development Program of China 2020YFA0908702National Natural Science Foundation of China 62272246
6 · The paper itself

Abstract

Recurrence related to poor prognosis is a leading cause of mortality in patients with breast cancer (BC). The MammaPrint (MP) genomic assay is designed to stratify recurrence risk and evaluate chemotherapy benefits for early-stage HR+/HER2- BC patients. However, MP fails to reveal spatial tumor morphology and is limited by high costs. In this study, a BC MP cohort is established and CPMP is developed, a weakly supervised agent-attention transformer model, to predict MP recurrence risk from annotation-free BC histopathological slides. CPMP achieves an AUROC of 0.824 ± 0.03 in predicting MP risk groups. CPMP is further leveraged for spatial and morphological analyses to explore histological patterns associated with MP risk groups. The model reveals tumor spatial localization at the whole-slide level and highlights distinct intercellular interaction patterns of MP groups. It also characterizes the diversity in tumor morphology and uncovers MP high-specific, low-specific, and colocalized morphological phenotypes that differ in quantitative cellular composition. Prognostic evaluation in the external cohort exhibits significant stratification of distant metastasis risk (HR: 3.14, p-value = 0.0014), underscoring the prognostic power of CPMP. These findings demonstrate the capability of CPMP in MP risk prediction, offering a flexible supplement to genomic risk assessment in early-stage BC.

Indexed as

Breast NeoplasmsNeoplasm Recurrence, LocalFemaleHumansMiddle AgedPrognosisRisk Assessmentbreast cancercomputational pathologyrecurrence risk assessmenttumor spatial morphologyweakly supervised learning

Identifiers

PMID41204749
PMCPMC12822445

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.