Evidence map›Paper›PMID 41203623›Full record

ArticleNature communications2025

Multifunctionally diverse alkaline phosphatases of Alteromonas drive the phosphorus cycle in the ocean.

Daniel E M Saavedra, José M González, Katharina Klaushofer, Eva Breyer, Leila Afjehi-Sadat, Silvia Bulgheresi, Li Liao, Xiyang Dong, Wayne M Patrick, Federico Baltar

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Daniel E M SaavedraFungal & Biogeochemical Oceanography Group, College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China. daniel.martinovic.saavedra@univie.ac.at.ORCID http://orcid.org/0000-0002-8293-0804
José M GonzálezDepartment of Microbiology, University of La Laguna, La Laguna, Spain.ORCID http://orcid.org/0000-0002-9926-3323
Katharina KlaushoferDepartment of Functional and Evolutionary Ecology, Fungal & Biogeochemical Oceanography Group, University of Vienna, Vienna, Austria.
Eva BreyerFungal & Biogeochemical Oceanography Group, College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China.ORCID http://orcid.org/0000-0002-7374-7100
Leila Afjehi-SadatResearch Support Facility, Mass Spectrometry Unit, University of Vienna, Vienna, Austria.ORCID http://orcid.org/0000-0001-6355-8077
Silvia BulgheresiDepartment of Functional and Evolutionary Ecology, Environmental Cell Biology Group, University of Vienna, Vienna, Austria.ORCID http://orcid.org/0000-0002-1441-7152
Li LiaoKey Laboratory for Polar Science, Ministry of Natural Resources, Polar Research Institute of China, Shanghai, 200136, China.ORCID http://orcid.org/0000-0002-8548-1928
Xiyang DongKey Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, China.ORCID http://orcid.org/0000-0002-9224-5923
Wayne M PatrickSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.ORCID http://orcid.org/0000-0002-2718-8053
Federico BaltarFungal & Biogeochemical Oceanography Group, College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China. fbaltar@shou.edu.cn.ORCID http://orcid.org/0000-0001-8907-1494

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphorus is a critically limiting nutrient in marine ecosystems, with alkaline phosphatases (APases) playing a vital role in liberating phosphate from organic compounds. However, the dominant taxa and APase families driving the marine phosphorus cycle, particularly in the deep ocean, remain poorly understood. Equally enigmatic remains the (multi)functional diversity and mechanisms of action of different APases. To address these gaps, this study combines global multi-omic analyses, biochemical studies of purified recombinant proteins, and laboratory experiments with proteomics and enzymatic rate measurements. Here we show that multi-omics consistently identify Alteromonas as a primary contributor to APase expression and production, with PhoA as the dominant APase family, particularly in the deep ocean. Furthermore, all four major APase families (PhoA, PhoD, PhoX, PafA) exhibit multifunctionality, revealing distinct substrate preferences and regulatory mechanisms. Ultimately, this study expands the mechanistic understanding of the marine phosphorus cycle, while revealing the significance of enzyme multifunctionality in elemental cycles.

Indexed as

Alkaline PhosphataseAlteromonasBacterial ProteinsPhosphorusSeawaterOceans and SeasPhylogenyProteomicsAlkaline PhosphataseBacterial ProteinsPhosphorus

Identifiers

PMID41203623
PMCPMC12594817

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.