Evidence map›Paper›PMID 41203602›Full record

ArticleNature communications2025

Reference genome and population genomic analyses reveal insight into herbicide tolerance in Avena fatua L.

Jianan Liu, Ningkun Liu, Wei Yan, Xiaoying Hu, Meijia Wang, Ruidong Qin, Lin Ma, Wei Li, Yu Wang, Qingbin Sun and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Dynamic evolution and hierarchical regulation of rDNA in polyploid oat.The Plant journal : for cell and molecular biology · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Jianan Liu *College of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Ningkun Liu *College of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Wei Yan *College of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Xiaoying Hu *College of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Meijia Wang *College of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Ruidong QinInstitute of Biodiversity Science, School of Life Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0003-3054-7077
Lin MaInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Wei LiCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.ORCID http://orcid.org/0000-0002-6726-329X
Yu WangCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Qingbin SunCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.ORCID http://orcid.org/0000-0001-8686-4421
Longsheng XingCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.ORCID http://orcid.org/0000-0002-4022-5242
Yange YunCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Yingying LiCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Jinjiang YanCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China.
Xuemin WangInstitute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhizhong GongCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China. gongzz@cau.edu.cn.ORCID http://orcid.org/0000-0001-6551-6014
Hongru WangShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China. wanghongru@caas.cn.ORCID http://orcid.org/0000-0001-8305-5231
Huilong DuCollege of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, Hebei, China. huilongdu@hbu.edu.cn.ORCID http://orcid.org/0000-0001-7755-6611

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32100500National Natural Science Foundation of China (National Science Foundation of China) 32401776Natural Science Foundation of Hebei Province (Hebei Provincial Natural Science Foundation) C2021201048Natural Science Foundation of Hebei Province (Hebei Provincial Natural Science Foundation) C2023201074
6 · The paper itself

Abstract

Avena fatua (weedy oat) is a globally pervasive weed, notorious for its adaptability to extreme environments and herbicide tolerance. Here, we present the 10.98-Gb hexaploid genome of A. fatua and a variation map from 768 wild and cultivated oats (A. fatua, A. sterilis and A. sativa), elucidating their genetic relationship and evolutionary history. Population genomic analyses reveal genetic connections between A. fatua and cultivated naked oats, and identify divergent regions between A. fatua and A. sativa enriched in genes associated with biotic and abiotic stresses. Among them, a herbicide-resistance locus is identified on chromosome 4D, with A. fatua accessions carrying a highly differentiated haplotype from cultivated oats. Multi-omics profiling and functional validation demonstrate that one expanded GST gene in this locus contributes significantly to oat herbicide resistance. Our study provides genomic resources for understanding A. fatua's broad adaptability to diverse environmental conditions, facilitating the development of climate-resilient oat varieties.

Indexed as

AvenaGenome, PlantHerbicide ResistanceHerbicidesChromosomes, PlantGenomicsHaplotypesPhylogenyPlant WeedsHerbicides

Identifiers

PMID41203602
PMCPMC12594974

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.