Evidence map›Paper›PMID 41202813›Full record

ArticleMolecular cell2025

Metabolic environment-driven remodeling of mitochondrial ribosomes regulates translation and biogenesis.

Fan Zheng, Zanlin Yu, Junming Zhuang, Lingraj Vannur, William Nickols, YongQiang Wang, Liying Li, Sho Joseph Ozaki Tan, Seungmin Yoo, Yifan Cheng and 1 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Med9 Is a Novel eIF4E-Interacting Protein inInternational journal of molecular sciences · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Fan ZhengBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Zanlin YuDepartment of Biochemistry and Biophysics, University of California San Francisco, 600 16th Street, San Francisco, CA 94158, USA.
Junming ZhuangBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Lingraj VannurBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
William NickolsBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
YongQiang WangDepartment of Biochemistry and Biophysics, University of California San Francisco, 600 16th Street, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA 94158, USA.
Liying LiBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Sho Joseph Ozaki TanBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Seungmin YooBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA.
Yifan ChengDepartment of Biochemistry and Biophysics, University of California San Francisco, 600 16th Street, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, University of California San Francisco, San Francisco, CA 94158, USA. Electronic address: yifan.cheng@ucsf.edu.
Chuankai ZhouBuck Institute for Research on Aging, 8001 Redwood Blvd., Novato, CA 94945, USA. Electronic address: kzhou@buckinstitute.org.

Funding

Multidimensional mapping of proteome changes and mechanisms underlying yeast replicative agingR01AG075201 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI Chuankai Zhou · 2022 to 2026
$2.8M
Mechanism of organelle dysfunction during aging and the related rejuvenation processDP5OD024598 · OD · BUCK INSTITUTE FOR RESEARCH ON AGING · PI ZHOU, CHUANKAI · 2017 to 2021
$2.4M
Advancing cryo-EM technology to address difficult biological questionsR35GM140847 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Yifan Cheng · 2021 to 2026
$2.1M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Glacios™ Cryo Transmission Electron Microscope with 200 kV XFEG opticsS10OD026881 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2019 to 2019
$1.8M
Alternative folding of soluble proteins induced by Aβ42 and Tau in aged cellsR21AG077556 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI ZHOU, CHUANKAI · 2022 to 2022
$534k
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
NIA NIH HHS R01 AG075201NIA NIH HHS R21 AG077556NIGMS NIH HHS R35 GM140847NIH HHS DP5 OD024598NIH HHS S10 OD020054NIH HHS S10 OD021741NIH HHS S10 OD026881
6 · The paper itself

Abstract

Cytosolic translation activity is fine-tuned by environmental conditions primarily through signaling pathways that target translation initiation factors. Although mitochondria possess their own translation machinery, they lack an autonomous signaling network analogous to their cytosolic counterpart for regulating translation activity. Consequently, our understanding of how mitochondrial translation activity is adjusted under different metabolic environments remains very limited. Here, we report a noncanonical mechanism for regulating mitochondrial translation activity via metabolism-dependent changes in the mitochondrial ribosome (mitoribosome) in S. cerevisiae. These changes arise from a metabolism-modulated mitoribosome assembly pathway that regulates the composition and conformation of the mitoribosome, thereby adjusting its translation activity to meet metabolic demands. Moreover, the translation activity of the mitoribosome feeds back to regulate the biogenesis of nuclear-encoded mitochondrial proteins, influencing mitochondrial functions and aging. Such a ribosomal remodeling-based "gear-switching" mechanism represents an orthogonal mode of translation regulation, compensating for the absence of a translation-modulating signaling network within mitochondria.

Indexed as

MitochondriaMitochondrial ProteinsMitochondrial RibosomesProtein BiosynthesisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGene Expression Regulation, FungalSignal TransductionMitochondrial ProteinsSaccharomyces cerevisiae Proteinsagingmetabolismmitochondriamitoribosometranslation activity

Identifiers

PMID41202813
PMCPMC12721022

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.