Evidence map›Paper›PMID 41199956›Full record

ArticleFrontiers in microbiology2025

Diversity of antimicrobial resistance and virulence genes of pathogenic

Samuel A M Connelly, Manal AbuOun, Nicholas Duggett, Miranda Kirchner, Indre Navickaite, Javier Nunez-Garcia, Susanna Williamson, Kelly Vaughan, Christopher Teale, Muna F Anjum

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Impact of virulence genes and pathotypes of intestinal pathogenicFrontiers in cellular and infection microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Samuel A M ConnellyAnimal and Plant Health Agency, Weybridge, United Kingdom.
Manal AbuOunAnimal and Plant Health Agency, Weybridge, United Kingdom.
Nicholas DuggettAnimal and Plant Health Agency, Weybridge, United Kingdom.
Miranda KirchnerAnimal and Plant Health Agency, Weybridge, United Kingdom.
Indre NavickaiteAnimal and Plant Health Agency, Weybridge, United Kingdom.
Javier Nunez-GarciaAnimal and Plant Health Agency, Weybridge, United Kingdom.
Susanna WilliamsonAnimal and Plant Health Agency, Bury St Edmunds, United Kingdom.
Kelly VaughanAPHA Veterinary Investigation Centre, Exeter, United Kingdom.
Christopher TealeVeterinary Investigation Centre, Animal and Plant Health Agency, Shrewsbury, United Kingdom.
Muna F AnjumAnimal and Plant Health Agency, Weybridge, United Kingdom.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: We characterised the genomes of 208 pathogenic Methods: AMR and VAGs were identified using the APHA SeqFinder tool, while SNP comparisons were performed with Snippy and RAxML-NG. A subset of isolates were long-read sequencing to examine mobile genetic elements. Results: The EC group primarily carried fimbrial and toxin genes, including Discussion: This study highlights the predominant AMR and VAGs in pathogenic

Indexed as

antimicrobial resistanceEscherichia colipig healthpostweaning diarrhoeavirulencewhole genome sequencing

Identifiers

PMID41199956
PMCPMC12586179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.