Evidence map›Paper›PMID 41199503›Full record

ArticlemAbs2025

Paratope plasticity determines anti-HER2 (4B5) antibody specificity.

P Daniel Warren, Terry H Landowski, Mark S Dodson, Adnan Gulzar, John D Palting, Erika Walker, Penny Towne, Margaret H Smith

Abstract read
In one paragraph

Article in mAbs, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

P Daniel WarrenAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.ORCID 0000-0002-9510-0789
Terry H LandowskiAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.
Mark S DodsonAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.
Adnan GulzarBiostatistics & Biophysics, Roche Diagnostics GmbH, Penzberg, Germany.
John D PaltingAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.
Erika WalkerAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.
Penny TowneAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.
Margaret H SmithAssay Development, Roche Tissue Diagnostics, Tucson, AZ, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The PATHWAY anti-HER2/neu (4B5) Rabbit Monoclonal Primary Antibody immunohistochemistry (IHC) assay is used to identify patients eligible for anti-HER2 targeted therapy. Previous work has demonstrated that the 4B5 antibody can react with the related family member HER4, and the nuclear protein ZSCAN18, under experimental conditions. Here, we used surface plasmon resonance, automated capillary electrophoresis (ACE), and IHC to fully define the 4B5 epitope and binding characteristics. The key amino acids that contribute to antibody recognition were identified and characterized with the limits of detection determined for HER4 and ZSCAN18. Additionally, the protein target responsible for cytoplasmic and nuclear reactivity observed by 4B5 in non-breast tissue types, that is not attributable to either HER2, HER4, or ZSCAN18, was identified. By means of protein purification, mass spectrometry, ACE analysis and IHC, 4B5 was found to react with the cytosolic aldo-keto reductase family 1 members B1, B10 and B15 (AKR1B1, AKR1B10, AKR1B15). The binding characteristics and limits of detection for these off-target species were defined. In-silico docking analysis of computationally folded 4B5 paratope regions identified key differences in the 4B5 paratope interaction between a peptide containing the HER2 epitope versus that of a partially homologous peptide sequence common to the AKR1 family. Flexibility of the complementarity-determining region loops in 4B5 imparts paratope plasticity that enables interaction with AKR1B family proteins. This antibody off-target recognition can result in cytoplasmic and nuclear IHC staining.

Indexed as

Antibodies, MonoclonalAntibody SpecificityErb-b2 Receptor Tyrosine KinasesAnimalsBinding Sites, AntibodyEpitopesFemaleHumansRabbitsAntibodies, MonoclonalEpitopesERBB2 protein, humanErb-b2 Receptor Tyrosine Kinasesepitope mappingHER2 biomarkerimmunohistochemistrymolecular modelingsurface plasmon resonance

Identifiers

PMID41199503
PMCPMC12599367

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.