ArticleScientific data2025
A chromosome-level genome assembly of the dried fruit mite Carpoglyphus lactis.
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Carpoglyphus lactis is a globally distributed stored-product pest mite that inflicts substantial damage on dried fruits, grains, and other preserved commodities. However, the absence of high-quality genomic resources has long constrained insights into its biology and evolutionary characteristics. In this study, we report a chromosome-level genome assembly for C. lactis, generated using an integrative approach that combines Illumina, PacBio, Oxford Nanopore, and Hi-C sequencing technologies. The assembled genome comprises approximately 53.47 Mb, featuring a contig N50 of 713.31 kb and a scaffold N50 of 5.92 Mb. Utilizing Hi-C data, 99.8% of the genome sequences were anchored onto nine chromosomes. Gene annotation revealed a total of 10,330 protein-coding genes, with repetitive sequences accounting for 9.66% of the genome. BUSCO completeness assessment using the arachnida_odb12 database (n = 1,123) indicated high integrity for both the genome assembly (94.6%) and gene annotation (94.7%). This chromosome-level genome serves as a valuable resource for investigating mite biology and facilitating the development of effective control strategies against this economically important pest species.
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