Evidence map›Paper›PMID 41197083›Full record

ArticleJCO precision oncology2025

Functional Characterization and a Real-World Clinical Laboratory Pilot of the Foundation for the National Institutes of Health Circulating Tumor DNA Quality Control Materials.

Cloud P Paweletz, Thomas D Forbes, Laura Yee, Grace Heavey, Hua-Jun He, Zhiyong He, Dana Connors, Daniel Stetson, Susan Keating, Kenneth D Cole and 30 more

Abstract read
In one paragraph

Article in JCO precision oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Cloud P PaweletzBelfer Center for Applied Cancer Science, Dana-Farber Cancer Institute, Boston, MA.
Thomas D ForbesMolecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD.
Laura YeeBiometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, MD.
Grace HeaveyBelfer Center for Applied Cancer Science, Dana-Farber Cancer Institute, Boston, MA.ORCID 0009-0003-2185-120X
Hua-Jun HeNational Institute of Standards and Technology, Gaithersburg, MD.
Zhiyong HeNational Institute of Standards and Technology, Gaithersburg, MD.
Dana ConnorsFoundation for the National Institutes of Health, Bethesda, MD.ORCID 0000-0001-7930-6843
Daniel StetsonAstraZeneca Inc, Waltham, MA.ORCID 0000-0002-3961-2739
Susan KeatingCCS Associates Inc, San Jose, CA.
Kenneth D ColeNational Institute of Standards and Technology, Gaithersburg, MD.
Li ChenMolecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD.ORCID 0000-0001-7973-5912
Rini PaulyMolecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD.
Hua BaoGeneseeq Technology Inc, Toronto, ON, Canada.ORCID 0000-0001-5774-8755
Xue WuGeneseeq Technology Inc, Toronto, ON, Canada.
Gary A PestanoBiodesix Inc, Louisville, CO.ORCID 0000-0002-7903-2552
Amanda L WeaverBiodesix Inc, Louisville, CO.
Manish KohliHuntsman Cancer Institute, University of Utah, Salt Lake City, UT.ORCID 0000-0002-9735-6614
Sabine HellwigARUP Laboratories, Salt Lake City, UT.ORCID 0000-0002-9809-947X
Adam S CornerBio-Rad Laboratories Inc, Hercules, CA.
Andrew M PrantnerBio-Rad Laboratories Inc, Hercules, CA.
Stephen Q WongPeter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-7335-2168
Stephen B FoxPeter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0002-7648-8896
Chelsee A HewittPeter MacCallum Cancer Centre, Melbourne, Australia.
Rainier ArnoldaPeter MacCallum Cancer Centre, Melbourne, Australia.ORCID 0000-0001-9336-5735
Greg R JonesNeoGenomics Laboratories Inc, Fort Myers, FL.
Jonathan CraftSysmex Inostics Inc, Baltimore, MD.
Melissa McConechyCanexia Health Corp, Vancouver, Canada.
Mawath A QahtaniCanexia Health Corp, Vancouver, Canada.
Florian KlemmSOPHiA GENETICS, Rolle, Switzerland.ORCID 0000-0002-8944-9175
Fuad MohammadSOPHiA GENETICS, Rolle, Switzerland.
Caroline SigmanCCS Associates Inc, San Jose, CA.ORCID 0000-0001-6623-4107
Liang-Chun LiuThermo Fisher Scientific Inc, Fremont, CA.
Qiang GanThermo Fisher Scientific Inc, Fremont, CA.
Yves KonigshoferLGC Clinical Diagnostics, Gaithersburg, MD.
Russell GarlickLGC Clinical Diagnostics, Gaithersburg, MD.ORCID 0000-0001-8073-0465
Ephrem ChinRevvity, Cambridge, United Kingdom.
Gary KelloffCancer Imaging Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, MD.
P Mickey WilliamsMolecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD.
Robert McCormackRMCC LLC, New Hope, PA.
Chris KarlovichMolecular Characterization Laboratory, Frederick National Laboratory for Cancer Research, Frederick, MD.ORCID 0000-0002-4617-2161

Funding

Early change in plasma tumor DNA as a patient and trial-level diagnostic in advanced lung cancerR01CA240592 · NCI · DANA-FARBER CANCER INST · PI PAWELETZ, CLOUD PETER · 2020 to 2024
$2.2M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS R01 CA240592
6 · The paper itself

Abstract

purposeWe previously developed quality control materials (QCMs) to aid in the development of circulating tumor DNA (ctDNA) assays. In this study, we further characterize the performance of the QCMs relative to clinical samples.

methodsQCMs were provided by three manufacturers. To functionally characterize the QCMs, we (1) evaluated

resultsFor functional characterization, part 1, QCM VAFs for hybrid capture were similar to ddPCR for

conclusionThis project revealed unexpected differences in performance of both assays and QCMs. These findings highlight the need for further validation across diverse alteration types and merit consideration by laboratories that rely on QCMs to develop and perform ctDNA assays for diagnostic applications.

Indexed as

Circulating Tumor DNALaboratories, ClinicalQuality ControlErbB ReceptorsHigh-Throughput Nucleotide SequencingHumansNational Institutes of Health (U.S.)Pilot ProjectsPolymerase Chain ReactionUnited StatesCirculating Tumor DNAErbB Receptors

Identifiers

PMID41197083
PMCPMC12614329

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.