Evidence map›Paper›PMID 41196173›Full record

ArticleThe journal of physical chemistry letters2025

Protonation-Enhanced Energy Transfer in Xanthorhodopsin Kin4B8.

Kazuhiro J Fujimoto, Yuta A Tsuzuki, Masae Konno, Takashi Nagata, Rintaro Murakami, Keiichi Inoue, Takeshi Yanai

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. CaThe journal of physical chemistry letters · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kazuhiro J FujimotoInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0003-0286-3646
Yuta A TsuzukiDepartment of Chemistry, Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.
Masae KonnoThe Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan.ORCID 0000-0002-0605-1816
Takashi NagataThe Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan.
Rintaro MurakamiDepartment of Chemistry, Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.
Keiichi InoueThe Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan.ORCID 0000-0002-6898-4347
Takeshi YanaiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0003-3933-8546

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial rhodopsins are key light-harvesting proteins for energy conversion in aquatic environments. While typically reliant on retinal, xanthorhodopsins (XRs) also employ carotenoids as antenna pigments. Here, we investigate Kin4B8, a novel freshwater XR that exhibits a counterintuitive increase in lutein-to-retinal excitation-energy transfer (EET) efficiency under acidic conditions─from 40% at neutral pH to 55%─despite a redshift in its absorption spectrum. By integrating spectroscopic measurements with quantum chemical calculations, we examine the influence of pH-dependent protonation states of two key residues, His60 and Asp94, on EET. We find that protonation of Asp94, in particular, markedly enhances lutein-retinal electronic coupling while moderately reducing spectral overlap. The 1.24-fold increase in squared coupling compensates for the decreased overlap, resulting in a net 1.07-fold increase in the EET rate. These findings suggest that rhodopsin-carotenoid complexes employ protonation-dependent tuning of carotenoid-retinal energy transfer as a mechanism for pH-responsive adaptation to diverse light environments.

Indexed as

ProtonsRhodopsins, MicrobialCarotenoidsEnergy TransferHydrogen-Ion ConcentrationQuantum TheoryCarotenoidsProtonsRhodopsins, Microbial

Identifiers

PMID41196173
PMCPMC12621250

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.