Evidence map›Paper›PMID 41191432›Full record

ArticleThe journal of physical chemistry. B2025

Molecular Modeling and Molecular Dynamics Simulation of a Packed and Intact Bacterial Microcompartment.

Saad Raza, Neetu Singh Yadav, Alexander Jussupow, Cheryl A Kerfeld, Michael Feig, Josh V Vermaas

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Saad RazaMSU-DOE Plant Research Laboratory, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.ORCID 0000-0003-4842-2192
Neetu Singh YadavMSU-DOE Plant Research Laboratory, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.ORCID 0000-0002-4535-4959
Alexander JussupowDepartment of Biochemistry and Molecular Biology, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.
Cheryl A KerfeldMSU-DOE Plant Research Laboratory, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.ORCID 0000-0002-9977-8482
Michael FeigDepartment of Biochemistry and Molecular Biology, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.ORCID 0000-0001-9380-6422
Josh V VermaasMSU-DOE Plant Research Laboratory, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States.ORCID 0000-0003-3139-6469

Funding

Modeling and dynamics of biomolecules on cellular scalesR35GM126948 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Michael Feig · 2018 to 2026
$3.2M
NIGMS NIH HHS R35 GM126948
6 · The paper itself

Abstract

Bacterial microcompartments (BMCs) are protein-bound organelles found in some bacteria which encapsulate enzymes for enhanced catalytic activity. These compartments spatially sequester enzymes within semipermeable shell proteins and are packed full of enzyme cargoes and metabolites as they fulfill their function. Coupling together recent SAXS and proteomics work, it is possible to develop molecular models for these microcompartments and interrogate enzyme and metabolite dynamics within. Our primary goal of this study is to quantify the permeability of metabolite glyceraldehyde-3-phosphate (G3P) and dihydroxyacetone phosphate (DHAP) across the BMC shell through classical molecular dynamics simulation. The

Indexed as

BacteriaMolecular Dynamics SimulationOrganelles

Identifiers

PMID41191432
PMCPMC12720247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.