Mapping of quantitative trait loci for early seed germination using whole-genome resequencing chromosome segment substitution lines of aus Kasalath in the background of japonica Nipponbare.

Siyao Shan, Muhan Ye, Jue Ruan, Sheng Teng, Min Yu

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Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 authors.

Siyao ShanCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.

Muhan YeInternational Research Center for Environmental Membrane Biology and Department of Horticulture, Foshan University, Foshan, China.

Jue RuanCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.

Sheng TengKey Laboratory of Microbiological Metrology, Measurement and Bio-product Quality Security, State Administration for Market Regulation, College of Life Sciences, China Jiliang University, Hangzhou, China.

Min YuInternational Research Center for Environmental Membrane Biology and Department of Horticulture, Foshan University, Foshan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Direct-seeding systems in rice require cultivars with enhanced seed vigor to ensure rapid and uniform germination. In this study, a population of 42 chromosome segment substitution lines (CSSLs) derived from aus Kasalath in the japonica Nipponbare background, coupled with whole-genome resequencing data, was analyzed to identify quantitative trait loci (QTLs) associated with early seed germination. Phenotypic traits, including germination percentage (GP), germination rate (GR), and germination index (GI), were measured over two consecutive years to ensure robustness. Six stable QTLs were identified, with

Indexed as

chromosome segment substitution lines (CSSL)riceseed germinationseed vigorwhole-genome resequencing

Identifiers

PMID41190208

DOI10.3389/fpls.2025.1691426

PMCPMC12580301

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