Evidence map›Paper›PMID 41188494›Full record

ArticleCommunications chemistry2025

Comparative evaluation of Olink Explore 3072 and mass spectrometry with peptide fractionation for plasma proteomics.

Noora Sissala, Haris Babačić, Isabelle R Leo, Xiaofang Cao, Jenny Forshed, Lars E Eriksson, Janne Lehtiö, Claudia Fredolini, Mikael Åberg, Maria Pernemalm

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Trial
  2. Review
  3. Genetic and molecular evidence linking CTSH to Alzheimer's disease pathophysiology.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Noora SissalaDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden. noora.sissala@ki.se.ORCID http://orcid.org/0009-0000-0758-8140
Haris BabačićDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden.ORCID http://orcid.org/0000-0003-0813-0005
Isabelle R LeoDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden.ORCID http://orcid.org/0000-0002-7627-6690
Xiaofang CaoDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden.
Jenny ForshedDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden.
Lars E ErikssonDepartment of Neurobiology, Care Sciences and Society, Karolinska Institutet, Huddinge, Sweden.ORCID http://orcid.org/0000-0001-5121-5325
Janne LehtiöDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden.ORCID http://orcid.org/0000-0002-8100-9562
Claudia FredoliniDepartment of Protein Science, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-7674-2014
Mikael ÅbergDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-7858-8233
Maria PernemalmDepartment of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Solna, Sweden. maria.pernemalm@ki.se.ORCID http://orcid.org/0000-0003-4624-031X

Funding

Human and Translational Immunology Training ProgramT32AI155387 · NIAID · YALE UNIVERSITY · PI Joseph Edgar Craft, Kevan C Herold · 2021 to 2026
$2.6M
Cancerföreningen i Stockholm (Cancer Society in Stockholm) 211073NIAID NIH HHS T32 AI155387Science for Life Laboratory (SciLifeLab) Technology Development GrantVetenskapsrådet (Swedish Research Council) 2022-01176
6 · The paper itself

Abstract

Plasma proteomics technologies are advancing rapidly, offering new opportunities for biomarker discovery and precision medicine. Direct comparisons of available technologies are needed to understand how platform selection affects downstream findings. We compared the performance of a peptide fractionation-based mass spectrometry method (HiRIEF LC-MS/MS) and the Olink Explore 3072 proximity extension assays on 88 plasma samples, analyzing 1129 proteins with both methods. The platforms exhibited complementary proteome coverage, high precision, and concordance in estimating sex differences in protein levels. Quantitative agreement between platforms was moderate (median correlation 0.59, interquartile range 0.33-0.75), mainly influenced by technical factors. Finally, we present a publicly available tool for peptide-level analysis of platform agreement and demonstrate its utility in clarifying cross-platform discrepancies in protein and proteoform measurements. Our findings provide insights for platform selection and study design, and highlight the value of combining mass spectrometry and affinity-based approaches for more comprehensive and reliable plasma proteome profiling.

Identifiers

PMID41188494
PMCPMC12586489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.