Evidence map›Paper›PMID 41186376›Full record

ArticleThe Journal of chemical physics2025

Improvement of the density fitting approach for the Gaussian electrostatic model via the use of the discrete Picard condition in Tychonov regularization.

Arkanil Roy, G Andrés Cisneros

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Article in The Journal of chemical physics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Arkanil RoyDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, 800 Campbell Road, Richardson, Texas 75080, USA.ORCID 0009-0000-0266-1898
G Andrés CisnerosDepartment of Chemistry and Biochemistry, The University of Texas at Dallas, 800 Campbell Road, Richardson, Texas 75080, USA.ORCID 0000-0001-6629-3430

Funding

Computational Simulations of DNA Transaction Enzymes - Application and DevelopmentR35GM151951 · NIGMS · UNIVERSITY OF TEXAS DALLAS · PI Gerardo Andres Cisneros · 2024 to 2026
$1.2M
NIGMS NIH HHS R35 GM151951
6 · The paper itself

Abstract

The Gaussian Electrostatic Model (GEM) is a density-based force field that employs Hermite Gaussian auxiliary basis sets (ABSs) to represent molecular electronic densities for accurate intermolecular interaction calculations. A critical step in GEM involves density fitting via Tychonov regularization, where the choice of the regularization parameter (λ) has traditionally relied on manual optimization, a tedious and non-systematic process. In this work, we present an automated approach to determine λ by implementing the Discrete Picard Condition (DPC), a method designed to stabilize solutions for ill-posed inverse problems. DPC ensures that the decay rate of the solution coefficients aligns with the singular values of the fitting matrix, enabling robust regularization without manual intervention. We validate this method by comparing intermolecular interactions for water dimers and ionic liquid systems against reference quantum mechanical and previously reported data. Results demonstrate that DPC-derived λ values yield interaction energies in close agreement with manually optimized parameters, achieving agreeable errors for most ABSs. Notably, DPC eliminates guesswork while maintaining accuracy, as evidenced by its successful integration into the GEM_fit software and the Psi4 quantum chemistry suite. This advancement streamlines the parameterization of polarizable force fields and enhances the reliability of GEM for molecular dynamics simulations.

Identifiers

PMID41186376
PMCPMC12643244

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.