Evidence map›Paper›PMID 41184553›Full record

ArticleNature methods2025

Whole-brain reconstruction of fiber tracts based on cytoarchitectonic organization.

Yue Zhang, Tao Song, Chao-Yu Yang, Yan Shen, Yi Yang, Xiaowei Hu, Rubin Zhao, Weibo Wang, Xin Wang, Hean Liu and 16 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Yue Zhang *Interdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.ORCID http://orcid.org/0009-0001-8130-3876
Tao Song *University of Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0009-0799-489X
Chao-Yu Yang *Interdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Yan ShenInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Yi YangInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Xiaowei HuInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Rubin ZhaoInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Weibo WangInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Xin WangInstitute of Neuroscience, State Key Laboratory of Genetic Evolution and Animal Models, Center for Excellence in Brain Science and Intelligence Technology, International Center for Primate Brain Research, Chinese Academy of Sciences, Shanghai, China.
Hean LiuInstitute of Neuroscience, State Key Laboratory of Genetic Evolution and Animal Models, Center for Excellence in Brain Science and Intelligence Technology, International Center for Primate Brain Research, Chinese Academy of Sciences, Shanghai, China.
Haotian YanInstitute of Neuroscience, State Key Laboratory of Genetic Evolution and Animal Models, Center for Excellence in Brain Science and Intelligence Technology, International Center for Primate Brain Research, Chinese Academy of Sciences, Shanghai, China.
Chunyun JiaShenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Yang LiuInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Xueyan WuSchool of Basic Medicine, Anhui Medical University, Hefei, China.
Huizhi HuangDepartment of Neonatology, Anhui Provincial Children's Hospital/Children's Hospital Affiliated to Anhui Medical University, Hefei, China.
Xintian HuKey Laboratory of Animal Models and Human Disease Mechanism, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
Jiang-Ning ZhouInstitute of Brain Science, The First Affiliated Hospital of Anhui Medical University, Hefei, China.ORCID http://orcid.org/0000-0003-1225-2873
Liming TanShenzhen-Hong Kong Institute of Brain Science, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Pak-Ming LauInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.
Hao WangNational Engineering Laboratory for Brain-inspired Intelligence Technology and Application, MoE Key Laboratory of Brain-inspired Intelligent Perception and Cognition, School of Information Science and Technology, University of Science and Technology of China, Hefei, China.ORCID http://orcid.org/0000-0001-7958-3090
Mu-Ming PooInstitute of Neuroscience, State Key Laboratory of Genetic Evolution and Animal Models, Center for Excellence in Brain Science and Intelligence Technology, International Center for Primate Brain Research, Chinese Academy of Sciences, Shanghai, China.
Pengcheng ZhouInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0003-1237-3931
Guo-Qiang BiInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China. gqbi@ustc.edu.cn.ORCID http://orcid.org/0000-0001-8735-3818
Yanyang XiaoInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China. yy.xiao@siat.ac.cn.ORCID http://orcid.org/0000-0002-8284-5183
Cirong LiuUniversity of Chinese Academy of Sciences, Beijing, China. crliu@ion.ac.cn.ORCID http://orcid.org/0000-0002-7986-4615
Fang XuInterdisciplinary Center for Brain Information, Brain Cognition and Brain Disease Institute, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China. fang.xu@siat.ac.cn.ORCID http://orcid.org/0000-0003-1458-9875

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mapping of axon trajectories is crucial for understanding brain organization. Using whole-brain high-throughput fluorescence imaging, we developed a cytoarchitecture-based link estimation (CABLE) method for accurate fiber tract mapping at cellular resolution. This method infers the fiber direction from the inherent anisotropy of the nucleus or soma shape and spatial arrangement of adjacent cells. The inferred fiber tracts were validated by tracing virally labeled individual axons in the monkey brain. This CABLE method could disentangle complex intersecting or bending fibers that were uncertain in diffusion magnetic resonance imaging tractography, allowing accurate brain-wide fiber tract reconstruction in marmoset and macaque brains. Finally, we applied CABLE for rapid mapping of axon fiber abnormalities in diseased neonatal human brain tissues, establishing a path for high-resolution brain mapping of fiber tracts in the human brain.

Indexed as

BrainBrain MappingDiffusion Tensor ImagingImage Processing, Computer-AssistedAnimalsAxonsCallithrixHumansMacaca

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.