Evidence map›Paper›PMID 41183211›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Mechanism of controlled radical initiation in radical SAM GTP 3',8-cyclase.

Haoran Pang, Di Li, Qinglin Wu, Pan Zhang, Weitao Yang, Alexey Silakov, Pei Zhou, Kenichi Yokoyama

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Haoran Pang *Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710.ORCID 0000-0001-7116-7439
Di Li *Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710.
Qinglin WuDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710.
Pan ZhangDepartment of Chemistry, Duke University, Durham, NC 27710.
Weitao YangDepartment of Chemistry, Duke University, Durham, NC 27710.ORCID 0000-0001-5576-2828
Alexey SilakovDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802.ORCID 0000-0002-9285-1253
Pei ZhouDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710.ORCID 0000-0002-7823-3416
Kenichi YokoyamaDepartment of Biochemistry, Duke University School of Medicine, Durham, NC 27710.ORCID 0000-0001-5625-469X

Funding

COMPUTER SIMULATIONS OF ENZYMES AND DNAR01GM061870 · NIGMS · DUKE UNIVERSITY · PI YANG, WEITAO · 2000 to 2022
$5.5M
Mechanism of cofactor biosynthesis required for chronic bacterial infectionR01GM112838 · NIGMS · DUKE UNIVERSITY · PI YOKOYAMA, KENICHI · 2015 to 2023
$2.8M
Computer Simulations of EnzymesR35GM158181 · NIGMS · DUKE UNIVERSITY · PI Weitao Yang · 2025 to 2026
$743k
HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM061870HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM112838NIGMS NIH HHS R01 GM061870NIGMS NIH HHS R01 GM112838NIGMS NIH HHS R35 GM158181
6 · The paper itself

Abstract

Metalloenzymes couple substrate binding and formation of oxidative intermediates to minimize unwanted side reactions. However, the molecular details of such coupling frequently remain ambiguous. Radical

Indexed as

Bacterial ProteinsS-AdenosylmethionineCatalytic DomainCoenzymesFree RadicalsHydrolasesMetalloproteinsMolybdenum CofactorsPteridinesBacterial ProteinsCoenzymesFree RadicalsHydrolasesMetalloproteinsMolybdenum CofactorsmolybdopterinPteridinesS-AdenosylmethionineS-adenosylmethionine enzyme MoaA, Staphylococcus aureusGTP 3’,8-cyclasemolybdenum cofactorradical initiationradical SAM enzymesSAM cleavage

Identifiers

PMID41183211
PMCPMC12625886

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.