Evidence map›Paper›PMID 41182312›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2026

Single-cell RNA sequencing reveals multiple pathways involving pulmonary immune and epithelial cells through which aryl hydrocarbon receptor activation attenuates acute respiratory distress syndrome.

Chloe Weyer-Nichols, Ahmed K Aladhami, Taylor H Carter, Kiesha M Wilson, Shruthi Thada, Prakash S Nagarkatti, Mitzi Nagarkatti

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chloe Weyer-NicholsDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.ORCID 0009-0004-0352-6988
Ahmed K AladhamiDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.
Taylor H CarterDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.
Kiesha M WilsonDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.ORCID 0000-0001-8550-3739
Shruthi ThadaDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.
Prakash S NagarkattiDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.
Mitzi NagarkattiDepartment of Pathology, Microbiology, and Immunology, University of South Carolina School of Medicine, Columbia, SC, United States.

Funding

Targeting early ceramide elevation in pre-symptomatic eczemaP20GM103641 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ENOS, REILLY, NAGARKATTI, PRAKASH S · 2012 to 2023
$20.7M
Flow Cytometry and Cell Analysis CoreP30GM154631 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NARENDRA P SINGH · 2024 to 2026
$4.5M
Role of the environmental sensor, AhR on colitisR01AI160896 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI, NAGARKATTI, PRAKASH S · 2021 to 2025
$2.6M
Epigenetic mechanisms in Transgenerational Effects of an Environmental PollutantR01ES030144 · NIEHS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI NAGARKATTI, MITZI, NAGARKATTI, PRAKASH S · 2019 to 2023
$2.5M
Mechanisms of Pathogenesis in Staphylococcal Enterotoxin B-Induced Acute Respiratory Distress SyndromeF31AI191665 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI Chloe Weyer-Nichols · 2025 to 2026
$92k
Center for Dietary Supplements and Inflammation, Centers of Biomedical Research Excellence NIH 1P30GM154631National Institutes of Health (NIH) 1R01AI160896National Institutes of Health (NIH) 5P20GM103641-08National Institutes of Health (NIH) 5R01ES030144NIAID NIH HHS F31 AI191665NIAID NIH HHS R01 AI160896NIEHS NIH HHS R01 ES030144NIGMS NIH HHS P20 GM103641NIGMS NIH HHS P30 GM154631
6 · The paper itself

Abstract

Acute respiratory distress syndrome (ARDS) is a severe inflammatory lung disorder triggered by pneumonia, sepsis, trauma, and COVID-19, leading to high mortality. In this study, we investigated the effect of aryl hydrocarbon receptor (AhR) activation by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), a potent ligand, on LPS-induced ARDS in mice using single-cell RNA sequencing (scRNA-seq). scRNA-seq revealed 16 transcriptionally distinct cell clusters in the lungs. AhR activation reversed the decreased pulmonary functions caused by LPS, and significantly reduced pulmonary infiltration of monocytes, neutrophils, and macrophages. Interestingly, AhR activation during ARDS led to increased proportions of alveolar macrophages and angiogenic and quiescent endothelial cells. Among the downregulated pathways, prostaglandin signaling was the most broadly suppressed across many cell types in the LPS + TCDD group. AhR activation suppressed the neutrophil chemotaxis pathway involving Cxcl2, Cxcl3, and Cxcl10. The damage to endothelial and epithelial cells induced during ARDS was also blocked by AhR activation. This was associated with decreased expression of S100a8 and S100a9. Notably, multiple pathways related to cellular junction organization were enriched following AhR activation. Additionally, Scgb1a1, also called club cell protein 16 (CC16), primarily secreted by club cells in the respiratory epithelium, was highly upregulated following AhR activation, accounting for lung homeostasis. Together, these findings demonstrate that AhR activation mitigates key inflammatory and barrier-disruptive processes involving multiple cell types in LPS-induced ARDS. These data identify AhR as a central regulator of pulmonary inflammation and epithelial-endothelial integrity and support the future evaluation of AhR-targeted therapeutics as potential treatment for ARDS.

Indexed as

Epithelial CellsLungReceptors, Aryl HydrocarbonRespiratory Distress SyndromeAnimalsBasic Helix-Loop-Helix ProteinsCalgranulin ACalgranulin BDisease Models, AnimalHumansLipopolysaccharidesMaleMiceMice, Inbred C57BLPolychlorinated DibenzodioxinsRNA-SeqAhr protein, mouseBasic Helix-Loop-Helix ProteinsCalgranulin ACalgranulin BLipopolysaccharidesPolychlorinated DibenzodioxinsReceptors, Aryl Hydrocarboncytokinesendothelial cellsinflammationlungsingle-cell sequencing

Identifiers

PMID41182312
PMCPMC13189174

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.