Evidence map›Paper›PMID 41181084›Full record

ArticlePlant biotechnology (Tokyo, Japan)2025

Species-level bacterial community shift in rice growth stages.

Sachiko Masuda, Kazuhiro Sasaki, Arisa Shibata, Tadashi Sato, Ken Shirasu

Abstract read
In one paragraph

Article in Plant biotechnology (Tokyo, Japan), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sachiko MasudaRIKEN Center for Sustainable Resource Science, RIKEN-TRIP, Kanagawa 230-0045, Japan.
Kazuhiro SasakiInstitute for Sustainable Agro-ecosystem Services, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 188-0001, Japan.
Arisa ShibataRIKEN Center for Sustainable Resource Science, RIKEN-TRIP, Kanagawa 230-0045, Japan.
Tadashi SatoGraduate School of Life Sciences, Tohoku University, Miyagi 980-8577, Japan.
Ken ShirasuRIKEN Center for Sustainable Resource Science, RIKEN-TRIP, Kanagawa 230-0045, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The phyllosphere is a major microbial habitat, where resident communities promote plant growth, suppress pathogens, and induce disease resistance. Here we examined how rice growth stages influence microbial colonization by analyzing bacterial communities in the phyllospheres of three growth stages (panicle initiation, heading, harvesting) across three genotypes: 'Koshihikari' and two introgression lines. Bacterial communities were similar among genotypes in both leaves and stems at heading but became distinct at harvesting, indicating that growth stages and plant organ play primary roles in shaping community structure. Full-length 16S rRNA gene amplicon sequencing further revealed significant shifts in species composition, with

Indexed as

16S rRNA full-length ampliconsbacterial communityrice-phyllosphere

Identifiers

PMID41181084
PMCPMC12573542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.