Evidence map›Paper›PMID 41178634›Full record

ArticlePlant biotechnology journal2026

Genome Assembly Revealed MdZAT5 Coordinates Anthocyanin Biosynthesis in Apple Fruit Peel and Flesh by Interacting With MdHY5.

Mengnan Zhao, Mosen Zhang, Weilei Sun, Shiyao Duan, Jie Zhang, Tingting Song, Yaoxin Wang, Yuncong Yao, Ji Tian

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mengnan ZhaoBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.
Mosen ZhangBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.
Weilei SunBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.ORCID https://orcid.org/0009-0007-1609-0169
Shiyao DuanBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.
Jie ZhangBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.
Tingting SongPlant Science and Technology College, Beijing University of Agriculture, Beijing, China.
Yaoxin WangSmartgenomics Technology Institute, Tianjin, China.
Yuncong YaoBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.ORCID https://orcid.org/0000-0001-5512-1668
Ji TianBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China.ORCID https://orcid.org/0000-0001-6275-6629

Funding

National Forestry and Grassland Administration - The Third Batch of Forest and Grassland Science and Technology Young Talents Award Program 2023132004National Natural Science Foundation of China 32572952The Construction of Beijing Science and Technology Innovation and Service Capacity in Top Subjects CEFF-PXM2019_014207_000032
6 · The paper itself

Abstract

Anthocyanins are plant pigments that contribute to fruit coloration and nutritional quality, yet the coordinated regulation of their accumulation in both peel and flesh remains elusive. Here, we present a haplotype-resolved genome of Malus cv. 'Royalty', a model cultivar with consistently red peel and flesh. A zinc-finger transcription factor, MdZAT5, was identified as a candidate regulator of anthocyanin biosynthesis, with two copies located on chromosomes 3 and 11 in each haplotype, as revealed by a well-assembled genome and transcriptomic profiling. Promoter and expression analyzes indicated that MdZAT5-3G acts downstream of light and MeJA signalling pathways. Transgenic analysis showed that MdZAT5-3G significantly promotes anthocyanin accumulation and upregulates anthocyanin biosynthesis genes such as MdCHS, MdCHI, and MdF3H, whereas its knockdown leads to reduced pigmentation. In contrast, MdZAT5-11G lacks regulatory function in both peel and flesh. Downstream binding assays confirmed that MdZAT5-3G directly binds to the promoters of anthocyanin biosynthetic genes, and biochemical assays revealed that its interaction with MdHY5 enhances promoter binding and transcriptional activation.

Indexed as

AnthocyaninsFruitMalusPlant ProteinsTranscription FactorsGene Expression Regulation, PlantGenome, PlantPigmentationPlants, Genetically ModifiedPromoter Regions, GeneticAnthocyaninsPlant ProteinsTranscription FactorsanthocyaninapplefleshfruitlightMeJApeel

Identifiers

PMID41178634
PMCPMC12946501

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.