Evidence map›Paper›PMID 41176526›Full record

ArticlePlanta2025

Genome-wide identification and functional annotation of the ascorbate peroxidase (APX) gene family in cotton: putative roles in reactive oxygen species (ROS) homeostasis within pigment glands.

Xue Zhang, Dongyun Zuo, Qiaolian Wang, Limin Lv, Youping Zhang, Yi Yang, Lingyu Hao, Shuo Zhang, Guoli Song, Hailiang Cheng

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xue ZhangNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Dongyun ZuoNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Qiaolian WangNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Limin LvNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Youping ZhangNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Yi YangNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Lingyu HaoNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Shuo ZhangNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Guoli SongNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. sglzms@163.com.
Hailiang ChengNational Key Laboratory of Cotton Bio-Breeding and Integrated Utilization, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China. pser2010@163.com.ORCID http://orcid.org/0009-0005-2378-9870

Funding

China Agriculture Research System (Grant No. CARS-15-06)Nanfan Special Project (Grant No. YBXM2316Nanfan Special Project YBXM2441).National Key R&D Program of China （2024YFD1200305）Natural Science Foundation of Henan Province Grant No. 2023ZD04041the Biological Breeding of Early Maturing and Disease Resistant Cotton Varieties (Grant No. 2023ZD04041)
6 · The paper itself

Abstract

MAIN

conclusionExpression of the APX gene and ROS levels in four Gossypium species are interrelated, functioning in cotton pigment gland development and abiotic stress responses. Ascorbate peroxidases (APXs) represent a crucial family of antioxidant enzymes that play essential roles in plant responses to environmental stresses and the regulation of developmental processes. Pigment glands in cotton are specialized structures formed through programmed cell death (PCD), a process inherently linked to the accumulation of reactive oxygen species (ROS). Despite the well-established functions of APXs in maintaining ROS homeostasis and the recognized involvement of ROS in pigment gland development, the specific interactions between APXs and ROS within these glands remain largely uncharacterized. In this study, bioinformatics approaches were employed to systematically analyze APX genes across multiple cotton varieties. Expression profiling revealed that APX genes exhibited both upregulated and downregulated responses to environmental stresses as well as hydrogen peroxide (H

Indexed as

Ascorbate PeroxidasesGossypiumPlant ProteinsReactive Oxygen SpeciesGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantHomeostasisHydrogen PeroxideMultigene FamilyPhylogenyStress, PhysiologicalAscorbate PeroxidasesHydrogen PeroxidePlant ProteinsReactive Oxygen SpeciesAbiotic stressAPX geneCottonExpression analysisPigment glandReactive oxygen species

Identifiers

PMID41176526

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.