Evidence map›Paper›PMID 41175482›Full record

ReviewDNA repair2025

Overcoming natural replication barriers formed by DNA structures and the role of repositioning to the nuclear periphery.

Jan Leendert Boer, Tyler M Maclay, Nolan T Caile, Catherine H Freudenreich

Abstract readReview
In one paragraph

Review in DNA repair, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Cross-species incompatibilities offer new insights into the functional consequences of satellite DNA evolution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jan Leendert BoerDepartment of Biology, Tufts University, Medford, MA 02155, United States.
Tyler M MaclayDepartment of Biology, Tufts University, Medford, MA 02155, United States.
Nolan T CaileDepartment of Biology, Tufts University, Medford, MA 02155, United States.
Catherine H FreudenreichDepartment of Biology, Tufts University, Medford, MA 02155, United States. Electronic address: catherine.freudenreich@tufts.edu.

Funding

Replication through DNA Structures and Consequences for Genome StabilityR35GM144215 · NIGMS · TUFTS UNIVERSITY MEDFORD · PI CATHERINE H FREUDENREICH · 2022 to 2026
$2.0M
NIGMS NIH HHS R35 GM144215
6 · The paper itself

Abstract

Endogenous barriers to DNA replication, such as repetitive DNA, non-B DNA structures, and protein barriers present significant challenges to replication. Upon encountering one of these barriers, cells employ a number of strategies to ensure completion of replication. Some of these pathways operate at the stalled replication fork and others occur post-replicatively. These pathways vary both in their timing and the nuclear location in which they occur. Here we review how cells deal with endogenous sources of replication stress, with a focus on structure-forming DNA repeats, and our current understanding of how cells use nuclear positioning to facilitate the repair of natural replication barriers.

Indexed as

Cell NucleusDNADNA ReplicationAnimalsDNA RepairHumansNucleic Acid ConformationDNADNA structureFork restartNon-B DNANuclear pore complexNuclear repositioningReplication fork barrier

Identifiers

PMID41175482
PMCPMC12582535

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.