Evidence map›Paper›PMID 41174026›Full record

ArticleScientific reports2025

Molecular characterization of chronic inflammatory diseases of the urinary bladder based on next-generation RNA sequencing and digital image analysis.

Yoshiyuki Akiyama, Jimpei Miyakawa, Masafumi Horie, Tetsuichi Saito, Tomonori Minagawa, Tetsuo Ushiku, Akiteru Goto, Haruki Kume, Yukio Homma, Yi Luo and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Animal Models of Hunner-Type Interstitial Cystitis.International journal of urology : official journal of the Japanese Urological Association · 2026
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yoshiyuki AkiyamaDepartment of Urology, Shinshu University School of Medicine, Nagano, Japan. yoshiyuki-akiyama@shinshu-u.ac.jp.ORCID http://orcid.org/0000-0003-1439-5640
Jimpei MiyakawaDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Masafumi HorieDivision of Molecular and Genomic Pathology, Department of Pathology, Kobe University Graduate School of Medicine, Kobe, Japan.
Tetsuichi SaitoDepartment of Urology, Shinshu University School of Medicine, Nagano, Japan.
Tomonori MinagawaDepartment of Urology, Shinshu University School of Medicine, Nagano, Japan.
Tetsuo UshikuDepartment of Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Akiteru GotoDepartment of Cellular and Organ Pathology, Graduate School of Medicine, Akita University, Akita, Japan.
Haruki KumeDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Yukio HommaDepartment of Interstitial Cystitis Medicine, Kyorin University School of Medicine, Tokyo, Japan.
Yi LuoDepartment of Urology, University of Iowa, Iowa City, IA, USA.
Daichi MaedaDivision of Molecular and Genomic Pathology, Department of Pathology, Kobe University Graduate School of Medicine, Kobe, Japan.

Funding

Japan Agency for Medical Research and Development 24ek0109763Japan Society for the Promotion of Science 22K16788Japan Society for the Promotion of Science,Japan 25K02771Ministry of Health, Labour and Welfare 24FC1017
6 · The paper itself

Abstract

This study aimed to elucidate distinct cellular and immunological characteristics associated with chronic inflammatory conditions of the urinary bladder, including Hunner-type interstitial cystitis (HIC), bacillus Calmette-Guérin (BCG)-related cystitis, follicular cystitis (FC), and chronic bacterial cystitis (CBC). Transcriptomic analyses using next-generation RNA sequencing, along with quantitative polymerase chain reaction, were performed on mucosal bladder biopsies to assess the whole transcriptional and immune-response profiles. Furthermore, digital immunohistochemical quantification evaluated urothelial denudation and the densities of infiltrating immune cells, including T-lymphocytes, B-lymphocytes, mast cells, and plasma cells. HIC specimens exhibited a markedly distinct transcriptional profile, with 3,566 differentially expressed genes and enrichment of 116 biological processes particularly associated with microbial response and heightened autoimmunity with Th1/Th17 axis polarization. Histologically, HIC bladders demonstrated significant epithelial denudation, elevated IL-17-positive cell density, and increased plasma cell ratios compared to other cystitis types. No significant differences were observed in overall lymphoplasmacytic or mast cell densities, nor in B cell ratios among the groups. These findings underscore a unique immunopathological signature in HIC, characterized by plasma cell predominance within a Th1/17-polarized immune environment and epithelial denudation, offering new insights into its pathogenesis and therapeutic targeting.

Indexed as

CystitisCystitis, InterstitialUrinary BladderAdultAgedChronic DiseaseFemaleGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansInflammationMaleMast CellsMiddle AgedSequence Analysis, RNATranscriptomeHunner lesionIL-17Interstitial cystitis

Identifiers

PMID41174026
PMCPMC12578850

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.