Evidence map›Paper›PMID 41173846›Full record

ArticleScientific data2025

Genome assembly and whole-genome resequencing study of Butuo Black sheep (Ovis aries).

Changsheng Zhong, Lianting Zhang, Weijia Song, Yingang Guo, Jinwang Liu, Zhangjia Baqian, Jinkang Wang, Ran Li, Jianmin Su

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Changsheng Zhong *Key Laboratory of Livestock Biology, College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
Lianting Zhang *Key Laboratory of Livestock Biology, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
Weijia Song *Key Laboratory of Livestock Biology, College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
Yingang GuoKey Laboratory of Livestock Biology, College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
Jinwang LiuKey Laboratory of Livestock Biology, College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province, 712100, China.
Zhangjia BaqianButuo County Agriculture and rural Bureau, Liangshan Yi Autonomous Prefecture, Xichang, Sichuan Province, 615014, China.
Jinkang WangButuo County Agriculture and rural Bureau, Liangshan Yi Autonomous Prefecture, Xichang, Sichuan Province, 615014, China.
Ran LiKey Laboratory of Livestock Biology, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi Province, 712100, China. ran.li1986@hotmail.com.
Jianmin SuKey Laboratory of Livestock Biology, College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province, 712100, China. sujm@nwafu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Butuo Black sheep (BBS), an ancient indigenous Chinese breed, has co-evolved with the Yi people's semi-nomadic lifestyle and demonstrated exceptional adaptability to high-altitude migrations. However, a high-quality reference genome for BBS is still lacking. In this study, we established a high-quality chromosome-level genome assembly of BBS using PacBio HiFi sequencing. The final assembled genome size was approximately 2.95 Gb, with a contig N50 of 71.45 Mb and a scaffold N50 of 92.26 Mb. The genome assembly achieved a high Benchmarking Universal Single-Copy Orthologs (BUSCO) score of 95.9%, indicating its high completeness and quality. The de novo genome prediction revealed that repetitive sequences accounted for 47.74% of the genome, with long interspersed nuclear elements (LINEs) being the most abundant. Additionally, we present 50 BBS shotgun genomes sequenced using the Illumina HiSeq 2000 platform, with a mean coverage of 10.36×. The study generated approximately 1.2 terabytes of raw data, with 99.9% clean reads mapping successfully to the sheep reference genome at 99.6% coverage. This extensive dataset provides a valuable resource for studying genetic diversity and evolutionary patterns in BBS.

Indexed as

GenomeSheep, DomesticAnimalsWhole Genome Sequencing

Identifiers

PMID41173846
PMCPMC12578823

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.