Evidence map›Paper›PMID 41172989›Full record

ArticleMolecular cell2025

Phage SSB detection by retron Eco8 msDNA unleashes nuclease-mediated immunity.

Chengzhi Yu, Chen Wang, Taylor Forman, Jiale Xie, Samantha Major, Matthew X Fang, Jewel E Voyer, Joe Pogliano, Tian-Min Fu

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Structure and mechanism of antiphage retron Eco2.Nature structural & molecular biology · 2026
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chengzhi YuDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; RNA Therapeutics Institute, UMass Chan Medical School, Worcester, MA 01655, USA; Department of Biochemistry and Molecular Biotechnology, UMass Chan Medical School, Worcester, MA 01655, USA.
Chen WangDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; RNA Therapeutics Institute, UMass Chan Medical School, Worcester, MA 01655, USA; Department of Biochemistry and Molecular Biotechnology, UMass Chan Medical School, Worcester, MA 01655, USA. Electronic address: chen.wang10@umassmed.edu.
Taylor FormanSchool of Biological Sciences, University of California, San Diego, San Diego, CA 92093, USA.
Jiale XieDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; RNA Therapeutics Institute, UMass Chan Medical School, Worcester, MA 01655, USA; Department of Biochemistry and Molecular Biotechnology, UMass Chan Medical School, Worcester, MA 01655, USA.
Samantha MajorSchool of Biological Sciences, University of California, San Diego, San Diego, CA 92093, USA.
Matthew X FangDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; Brown University, Providence, RI 02912, USA.
Jewel E VoyerDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; RNA Therapeutics Institute, UMass Chan Medical School, Worcester, MA 01655, USA; Department of Biochemistry and Molecular Biotechnology, UMass Chan Medical School, Worcester, MA 01655, USA.
Joe PoglianoSchool of Biological Sciences, University of California, San Diego, San Diego, CA 92093, USA.
Tian-Min FuDepartment of Pathology, UMass Chan Medical School, Worcester, MA 01655, USA; RNA Therapeutics Institute, UMass Chan Medical School, Worcester, MA 01655, USA; Department of Biochemistry and Molecular Biotechnology, UMass Chan Medical School, Worcester, MA 01655, USA. Electronic address: tianmin.fu@umassmed.edu.

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
Molecular and cellular biology of the phage nucleus and spindleR01GM129245 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, JOSEPH A · 2018 to 2025
$4.2M
MOLECULAR MECHANISMS OF V-ATPASES: ASSEMBLY, BIOGENESIS, REGULATION, AND FUNCTIONR35GM147465 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Tianmin Fu · 2022 to 2026
$2.1M
NIGMS NIH HHS R01 GM129245NIGMS NIH HHS R35 GM147465NIH HHS 75N91019D00024
6 · The paper itself

Abstract

Retrons are antiphage defense systems that synthesize multicopy single-stranded DNA (msDNA) and are being adapted for genome engineering. The Escherichia coli retron Eco8 system comprises a reverse transcriptase (RT), an msDNA, and an overcoming lysogenization defect (OLD)-family nuclease (Eco8-OLD), reminiscent of Gabija. Here, we present the cryo-electron microscopy structure of the Eco8 supramolecular complex, a symmetric 4:4:4 assembly of RT, Eco8-OLD, and msDNA (a hybrid of msrRNA and msdDNA). The msDNA anchors RT and Eco8-OLD into a compact architecture that traps Eco8-OLD in an autoinhibited conformation. Upon phage infection, phage single-stranded DNA-binding proteins (SSBs) bind msdDNA, inducing conformational rearrangements that relieve Eco8-OLD autoinhibition and activate its non-specific DNA nuclease activity. This structural transition enables Eco8 to mount a robust antiphage response by restricting phage genome amplification. Our findings reveal a previously unrecognized mechanism of retron activation and highlight the central role of msDNA as a molecular switch in controlling retron-mediated antiphage defense.

Indexed as

ColiphagesDeoxyribonucleasesDNA-Binding ProteinsDNA, Single-StrandedDNA, ViralEscherichia coliEscherichia coli ProteinsRNA-Directed DNA PolymeraseViral ProteinsCryoelectron MicroscopyLysogenyModels, MolecularProtein BindingDeoxyribonucleasesDNA-Binding ProteinsDNA, Single-StrandedDNA, ViralEscherichia coli ProteinsRNA-Directed DNA PolymeraseViral ProteinsantiphageEco8GabijaGajAmsDNAncRNAOLD nucleasephageretronreverse transcriptase

Identifiers

PMID41172989
PMCPMC13210406

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.