Evidence map›Paper›PMID 41171079›Full record

ArticleThe Journal of cell biology2026

Close-up of vesicular ER exit sites by volume electron imaging using FIB-SEM.

Athul Nair, Akhil Nair, Patrick Stock, Arkash Jain, Elliott Somerville, Anwesha Sanyal, Jose Inacio Costa-Filho, Tom Kirchhausen

Abstract read
In one paragraph

Article in The Journal of cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The 50-nm Free Vesicles Visible inCurrent issues in molecular biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Athul NairProgram in Cellular and Molecular Medicine, Boston Children's Hospital , Boston, MA, USA.ORCID 0009-0007-7561-2406
Akhil NairProgram in Cellular and Molecular Medicine, Boston Children's Hospital , Boston, MA, USA.ORCID 0009-0006-5317-8373
Patrick StockProgram in Cellular and Molecular Medicine, Boston Children's Hospital , Boston, MA, USA.ORCID 0009-0005-5099-5055
Arkash JainProgram in Cellular and Molecular Medicine, Boston Children's Hospital , Boston, MA, USA.ORCID 0000-0003-2692-7472
Elliott SomervilleProgram in Cellular and Molecular Medicine, Boston Children's Hospital , Boston, MA, USA.ORCID 0000-0001-7283-7182
Anwesha SanyalDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-1456-8604
Jose Inacio Costa-FilhoDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-3531-0987
Tom KirchhausenDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-0559-893X

Funding

VISUALIZATION OF SUBCELLULAR DYNAMICS IN MULTICELLULAR ORGANISMSR35GM130386 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI TOMAS KIRCHHAUSEN · 2019 to 2026
$4.0M
BiogenBoston Children's HospitalMassachusetts Life Sciences CenterNIGMS NIH HHS GM130386NIGMS NIH HHS R35 GM130386Novo Nordisk Foundation
6 · The paper itself

Abstract

The architecture of ER exit sites (ERES), the first sites of membrane remodeling in protein secretion, remains unclear, with descriptions ranging from vesicular clusters to extended tubular structures. We addressed this divergence by visualizing ERES in cells not overexpressing secretory cargo using large-scale volume-focused ion beam scanning EM (FIB-SEM) after high-pressure freeze substitution. Automated segmentation in EM (ASEM), our 3D U-Net pipeline trained with sparsely labeled 50-70-nm COPI vesicles near the Golgi, accurately detected them in HeLa, SVG-A, and iPSC-derived neurons. Using the same model, we identified abundant clusters of ∼5-40 larger vesicles (∼65-85 nm) confined within ∼250 nm3 regions adjacent to flattened ER domains, consistent with vesicular ERES. Similar assemblies also appeared alongside tubular networks and varicosities extending from enlarged ER domains, previously described as the sole ERES in HeLa cells. These findings reveal that vesicular ERES are widespread and morphologically diverse, resolving longstanding contradictions in early secretory pathway organization.

Indexed as

COP-Coated VesiclesEndoplasmic ReticulumGolgi ApparatusHeLa CellsHumansInduced Pluripotent Stem CellsNeuronsVolume Electron Microscopy

Identifiers

PMID41171079
PMCPMC13222588

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.