Evidence map›Paper›PMID 41168247›Full record

ArticleScientific data2025

Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral.

Kefan Li, Wei Lin, Jiebin Zhou, Chichi Liu, Muhamad Syaifudin, Jiahong Huang, Pengbing Pei, Hong Du, Tangcheng Li

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kefan Li *Guangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Wei Lin *Guangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Jiebin ZhouGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Chichi LiuState Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, China.
Muhamad SyaifudinGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Jiahong HuangGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Pengbing PeiGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Hong DuGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China.
Tangcheng LiGuangdong Provincial Key Laboratory of Marine Biology and Department of Biology, Shantou University, Shantou, 515063, China. tchli@stu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrio species are recognized as potential causative agents of coral diseases, yet their metabolic capabilities concerning different nitrogen sources, such as urea, have been largely understudied. This study focuses on 18 urea-utilizing Vibrio strains isolated from coral, for which we performed complete genome sequencing using Illumina technology. The average assembled genome size was 5.67 Mb, with an average contig N50 of 0.61 Mb and scaffold N50 of 0.61 Mb. We predicted an average of 5,087 protein-coding genes per genome, with over 95% of these genes successfully annotated for function. Benchmarking Universal Single-Copy Orthologs (BUSCO) analysis revealed an average 98.9% completeness for the Vibrio spp. lineage. Overall, this study provides high-quality genomic data for these Vibrio strains, offering a valuable resource for further research into their evolution, molecular mechanisms of pathogenicity, and their specific roles in the nitrogen cycle of the coral ecosystem.

Indexed as

AnthozoaGenome, BacterialUreaVibrioAnimalsWhole Genome SequencingUrea

Identifiers

PMID41168247
PMCPMC12575705

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.