Evidence map›Paper›PMID 41166719›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2025

Evaluating COVID-19 severity prediction and immune dynamics with NULISAseq: Insights from the IMPACC study.

Koji Abe, Tyson H Holmes, Tran T Nguyen, IMPACC Network, Seunghee Kim-Schulze, Ofer Levy, Lindsey R Baden, Esther Melamed, Lauren I R Ehrlich, Grace A McComsey and 33 more

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Koji AbeStanford University School of Medicine, Palo Alto, CA, United States.
Tyson H HolmesStanford University School of Medicine, Palo Alto, CA, United States.
Tran T NguyenStanford University School of Medicine, Palo Alto, CA, United States.
IMPACC Network
Seunghee Kim-SchulzeIcahn School of Medicine at Mount Sinai, New York, NY, United States.
Ofer LevyPrecision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA, United States.
Lindsey R BadenBrigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.
Esther MelamedThe University of Texas at Austin, Austin, TX, United States.
Lauren I R EhrlichThe University of Texas at Austin, Austin, TX, United States.
Grace A McComseyCase Western Reserve University and University Hospitals of Cleveland, Cleveland, OH, United States.
Rafick P SekalyCase Western Reserve University and University Hospitals of Cleveland, Cleveland, OH, United States.
Charles B CairnsTower Health Hospital, Drexel University, Philadelphia, PA, United States.
Elias K HaddadTower Health Hospital, Drexel University, Philadelphia, PA, United States.
Albert C ShawYale School of Medicine, New Haven, CT, United States.
David A HaflerYale School of Medicine, New Haven, CT, United States.
Ruth R MontgomeryYale School of Medicine, New Haven, CT, United States.
David B CorryBaylor College of Medicine and the Center for Translational Research on Inflammatory Diseases, Houston, TX, United States.
Farrah KheradmandBaylor College of Medicine and the Center for Translational Research on Inflammatory Diseases, Houston, TX, United States.
Mark A AtkinsonUniversity of Florida, Gainesville, FL, United States.
Scott C BrakenridgeUniversity of Florida, Gainesville, FL, United States.
Nelson I Agudelo HiguitaOklahoma University Health Sciences Center, Oklahoma City, OK, United States.
Jordan P MetcalfOklahoma University Health Sciences Center, Oklahoma City, OK, United States.ORCID 0000-0003-4359-5270
Catherine L HoughOregon Health & Science University, Portland, OR, United States.
William B MesserOregon Health & Science University, Portland, OR, United States.
Bali PulendranStanford University School of Medicine, Palo Alto, CA, United States.
Kari C NadeauStanford University School of Medicine, Palo Alto, CA, United States.
Mark M DavisStanford University School of Medicine, Palo Alto, CA, United States.
Ana Fernandez-SesmaIcahn School of Medicine at Mount Sinai, New York, NY, United States.
Viviana SimonIcahn School of Medicine at Mount Sinai, New York, NY, United States.ORCID 0000-0002-6416-5096
Monica KraftUniversity of Arizona, Tucson, AZ, United States.
Chris BimeUniversity of Arizona, Tucson, AZ, United States.
Carolyn S CalfeeUniversity of California, San Francisco, San Francisco, CA, United States.
David J ErleUniversity of California, San Francisco, San Francisco, CA, United States.
Joanna SchaenmanDavid Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, United States.
Elaine F ReedDavid Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, United States.
Al OzonoffClinical and Data Coordinating Center, Precision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA, United States.ORCID 0000-0003-4233-5899
Bjoern PetersLa Jolla Institute for Immunology, La Jolla, CA, United States.
Steven H KleinsteinYale School of Medicine, New Haven, CT, United States.ORCID 0000-0003-4957-1544
Alison D AugustineNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Joann Diray-ArceClinical and Data Coordinating Center, Precision Vaccines Program, Boston Children's Hospital, Harvard Medical School, Boston, MA, United States.
Patrice M BeckerNational Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, United States.
Nadine RouphaelEmory School of Medicine, Atlanta, GA, United States.ORCID 0000-0002-2512-7919
Holden T MaeckerStanford University School of Medicine, Palo Alto, CA, United States.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Oregon Clinical and Translational Research Institute - The National COVID Cohort Collaborative (N3C)UL1TR002369 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI Cynthia D Morris, Christopher G. Slatore · 2017 to 2026
$78.4M
Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI COGGESHALL, KENNETH MARK · 2004 to 2023
$56.2M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI Albert C Shaw · 2010 to 2026
$50.4M
Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HARRIS, EVA · 2015 to 2021
$46.6M
Systems Biological Analysis of Innate and Adaptive Responses to VaccinationU19AI090023 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI, LI, SHUZHAO · 2010 to 2021
$45.0M
Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PRESCOTT G WOODRUFF · 2008 to 2026
$41.1M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
Transcriptomics to define biomarkers of neonatal vaccine immunogenicityU19AI118608 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI LEVY, OFER · 2017 to 2021
$24.7M
HIPC Data Coordinating CenterU01AI167892 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Steven H. Kleinstein, Bjoern Peters · 2022 to 2026
$18.7M
Tollip inhibits IL-33 signaling during airway influenza virus infectionU19AI125357 · NIAID · UNIVERSITY OF ARIZONA · PI KRAFT, MONICA, VERCELLI, DONATA · 2016 to 2025
$14.7M
Systems biological assessment of T cell responses to vaccinationU19AI167903 · NIAID · STANFORD UNIVERSITY · PI BALI PULENDRAN · 2022 to 2026
$13.2M
National Institute of Allergy and Infectious DiseasesNational Science Foundation DMS2310836NCATS NIH HHS UL1 TR002369NCATS NIH HHS UM1 TR004528NCATS NIH HHS UM1TR004528NIAID NIH HHS R01 AI104870NIAID NIH HHS R01 AI122220NIAID NIH HHS R01 AI135803NIAID NIH HHS R01 AI145835NIAID NIH HHS U01 AI167892NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI062629NIAID NIH HHS U19 AI077439NIAID NIH HHS U19 AI089992NIAID NIH HHS U19 AI090023NIAID NIH HHS U19 AI118608NIAID NIH HHS U19 AI118610NIAID NIH HHS U19 AI125357NIAID NIH HHS U19 AI128910NIAID NIH HHS U19 AI128913NIAID NIH HHS U19 AI167903NIAID NIH HHS U54 AI142766NIDA NIH HHS T32 DA018926NIH HHS 3U01AI167892-01S2NIH HHS 3U01AI167892-03S2NIH HHS 3U19AI077439-13NIH HHS 3U19AI089992-09NIH HHS 3U19AI1289130NIH HHS 3U19AI128913-03NIH HHS 4U19AI090023-11NIH HHS 4U19AI118610-06NIH HHS 5R01AI104870-07NIH HHS 5R01AI135803-03NIH HHS 5T32DA018926-18NIH HHS 5U19AI057229-17NIH HHS 5U19AI057229-18NIH HHS 5U19AI062629-17NIH HHS 5U19AI118608-04NIH HHS 5U19AI125357-05NIH HHS 5U19AI128910-04NIH HHS 5U19AI128913-03NIH HHS 5U54AI142766-03NIH HHS R01AI122220NIH HHS R01AI145835-01A1S1NIH HHS U19AI128913-04S1
6 · The paper itself

Abstract

The National Institutes of Health-funded IMPACC (IMmunoPhenotyping Assessment in a COVID-19 Cohort) evaluated longitudinal clinical and immunological features of human patients hospitalized for COVID-19. This study focuses on comparing the novel NULISAseq assay with the Olink platform using a subset of participants to assess their efficacy in predicting COVID-19 severity and understanding immune response dynamics. Our findings reveal that NULISAseq could provide superior detectability and dynamic range across various targets. Elastic net analysis demonstrated that specific proteins, including amphiregulin, effectively predict COVID-19 severity from sera at admission (samples drawn within 96 h of admission), with a test area under the curve of 0.84. Longitudinal analysis identified significant differences in multiple targets, including IL-5 and interferons, between low- and high-severity groups over time. Additionally, association rule mining suggested potential early markers predictive of later immune cell changes. These findings emphasize the potential of NULISAseq for comprehensive profiling, early prediction, and identification of targeted therapeutic interventions in COVID-19.

Indexed as

COVID-19SARS-CoV-2AdultAgedBiomarkersFemaleHumansImmunophenotypingLongitudinal StudiesMaleMiddle AgedSeverity of Illness IndexBiomarkerscytokineshumaninflammationmolecular biologyviral

Identifiers

PMID41166719
PMCPMC12726064

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.