Evidence map›Paper›PMID 41166417›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Glycosaminoglycans activate peptidylarginine deiminase 4 by enhancing calcium affinity.

Grzegorz P Bereta, Ewa Bielecka, Karolina Marzec, Łukasz Pijanowski, Artur P Biela, Piotr Wilk, Marta Kamińska, Jakub Nowak, Elżbieta Wątor-Wilk, Przemysław Grudnik and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Grzegorz P BeretaMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-2925-7796
Ewa BieleckaMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-2631-6711
Karolina MarzecMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.
Łukasz PijanowskiMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-0449-8470
Artur P BielaMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0001-6733-242X
Piotr WilkMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0001-7217-4163
Marta KamińskaBroegelmann Research Laboratory, University of Bergen, Bergen NO-5020, Norway.ORCID 0000-0002-8299-7603
Jakub NowakMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.
Elżbieta Wątor-WilkMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-8187-7319
Przemysław GrudnikMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-7157-0014
Dominik KowalczykDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0002-9868-1179
Joanna KoziełDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0003-3436-6425
Piotr MydelDepartment of Microbiology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow 30-387, Poland.
Marcin PorębaDepartment of Chemical Biology and Bioimaging, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw 50-372, Poland.ORCID 0000-0002-0214-6252
Tomasz KantykaMalopolska Centre of Biotechnology, Jagiellonian University, Krakow 30-387, Poland.ORCID 0000-0003-3023-2382

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
EEA Grants/Norway Grants (EEA and Norway Grants) 2019/34/H/NZ1/00674National Science Centre Poland 2018/30/M/NZ1/00367National Science Centre Poland 2024/53/B/NZ5/01005NIGMS NIH HHS R01 GM129325Polish Ministry of Higher Education 1/SOL/2021/2Research Council of Norway and NIH 296129
6 · The paper itself

Abstract

Rheumatoid arthritis is a chronic inflammatory disease driven by abnormal protein modifications. These include citrullination of arginine residues by the calcium-activated enzyme peptidylarginine deiminase 4 (PAD4). However, calcium in body fluids may not fully activate PAD4, suggesting the potential involvement of other activators. In this study, we investigated the ability of glycosaminoglycans (a class of negatively charged polysaccharides) to modulate PAD4 activity. We found that model glycosaminoglycans bind to the enzyme with a nanomolar affinity, increase its calcium sensitivity, and require enzyme dimerization for activation. These effects depend on the size and negative charge of the glycosaminoglycan, and its various natural forms activate PAD4. Thus, our findings elucidate a mechanism by which common physiological compounds modulate PAD4 activity, potentially contributing to disease etiology.

Indexed as

CalciumGlycosaminoglycansProtein-Arginine Deiminase Type 4Arthritis, RheumatoidEnzyme ActivationHumansProtein-Arginine DeiminasesCalciumGlycosaminoglycansPADI4 protein, humanProtein-Arginine DeiminasesProtein-Arginine Deiminase Type 4citrullinationglycosaminoglycanPAD4peptidylarginine deiminaserheumatoid arthritis

Identifiers

PMID41166417
PMCPMC12595441

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.