Evidence map›Paper›PMID 41165314›Full record

ArticlemSystems2025

Differential recovery of chain-elongating bacteria: comparing droplet, plating, and dilution-to-extinction methods.

Wannes Nauwynck, Myrsini Sakarika, Karoline Faust, Nico Boon

Abstract readComparative Study
In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Wannes NauwynckCenter for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Gent, Belgium.ORCID 0000-0002-3471-8833
Myrsini SakarikaCenter for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Gent, Belgium.ORCID 0000-0003-2098-8688
Karoline FaustLaboratory of Molecular Bacteriology, Rega Institute for Medical Research, Department of Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium.ORCID 0000-0001-7129-2803
Nico BoonCenter for Microbial Ecology and Technology (CMET), Department of Biotechnology, Ghent University, Gent, Belgium.ORCID 0000-0002-7734-3103

Funding

Fonds Wetenschappelijk Onderzoek 11E3422N,G020119NUniversiteit Gent BOF.PDO.2021.0036.01, BOF.PDO.2025.0007.01
6 · The paper itself

Abstract

Microbial chain elongation via reverse β-oxidation offers a more sustainable route to produce medium-chain fatty acids like caproate, commodity chemicals typically produced via (petro)chemical processes. Thermophilic anaerobic microbiomes allow production at a high rate and selectivity but remain poorly understood due to the limited cultivability of their members. To better access functional taxa from a thermophilic chain-elongating reactor community, we applied multiple isolation strategies: conventional anaerobic plating, dilution-to-extinction (DTE), droplet-based microfluidics, and fluorescence-activated cell sorting (FACS). We evaluated the taxonomic range and cultivation success of each method using 16S rRNA gene sequencing. Each method yielded a distinct subset of microbial taxa. While

Indexed as

BacteriaFlow CytometryMicrobiotaMicrofluidicsRNA, Ribosomal, 16SRNA, Ribosomal, 16Scaproic acidchain elongationcultivabilitycultivation biasdouble emulsiondroplet microfluidicsrare biospherethermophilic microbiome

Identifiers

PMID41165314
PMCPMC12625695

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.