Evidence map›Paper›PMID 41163325›Full record

ArticleSmall methods2025

Two-Layer Droplet Arrays Enable Dynamic Manipulation of Cell Microenvironment During High-Throughput Bacterial Cultivation.

Bijing Xiong, Maximilian Breitfeld, Petra S Dittrich

Abstract read
In one paragraph

Article in Small methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bijing XiongDepartment of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Basel, 4056, Switzerland.ORCID 0000-0001-8912-906X
Maximilian BreitfeldDepartment of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Basel, 4056, Switzerland.ORCID 0009-0002-0655-8892
Petra S DittrichDepartment of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Basel, 4056, Switzerland.ORCID 0000-0001-5359-8403

Funding

Eidgenössische Technische Hochschule Zürich 23-1 FEL-04Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 51NF40_180541
6 · The paper itself

Abstract

Arrays of pico-to-microliter droplets, organized on a surface, enable chemical and biological workflows at high throughput. Here, a platform employing two-layer droplets is presented to enable flexible manipulation of the droplets' microenvironment for dynamic biological cultivation. Arrays of 6784 agarose droplets (≈2.0 nL per droplet) encapsulating and immobilizing bacterial cells are generated. After that, aqueous droplets (≈3.7 nL) with a defined composition are deposited atop to form a thin liquid layer surrounding the agarose droplets. Chemical exchange between the two layers is extremely fast (equilibrium within 15 s for fluorescein). Moreover, the aqueous layer can be removed, opening the possibility to extract substances from the agarose droplets. Indeed, repeated addition and aspiration of a buffer successfully remove dyes or drugs previously added to the agarose droplets. Therefore, antibiotic drug testing can be performed under both static and transient exposure profiles. The latter reveals that bacterial responses such as bacterial killing and resuscitation are both heterogeneous at the single-cell level. Last, it is exemplified how such droplet manipulation strategy can also be use in long-term experimentation, where medium replenishment, performed at 12-h intervals during a 72-h experiment, enables the cultivation of a slow-growing microorganism in nanoliter droplets.

Indexed as

BacteriaCellular MicroenvironmentHigh-Throughput Screening AssaysAnti-Bacterial AgentsSepharoseAnti-Bacterial AgentsSepharoseantimicrobial susceptibility testingdroplet manipulationhigh‐throughput screeningopen microfluidicspersistenceslow‐growing microorganism

Identifiers

PMID41163325
PMCPMC12716177

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.