Evidence map›Paper›PMID 41162855›Full record

ArticleBMC genomic data2025

Whole-genome sequence of Xanthomonas arboricola pv. pruni strain 9-4 causing peach bacterial spot in China.

Jiayu Yuan, Chun Yan, Junnan Wang, Zhaolin Ji, Lina Yang

Abstract read
In one paragraph

Article in BMC genomic data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Research Progress of Peach Bacterial Spot Disease.International journal of molecular sciences · 2026
    Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jiayu YuanCollege of Plant Protection, Yangzhou University, Yangzhou, Jiangsu, 225009, China.
Chun YanCollege of Plant Protection, Yangzhou University, Yangzhou, Jiangsu, 225009, China.
Junnan WangCollege of Plant Protection, Yangzhou University, Yangzhou, Jiangsu, 225009, China.
Zhaolin JiCollege of Plant Protection, Yangzhou University, Yangzhou, Jiangsu, 225009, China. zhlji@yzu.edu.cn.
Lina YangCollege of Plant Protection, Yangzhou University, Yangzhou, Jiangsu, 225009, China. linayang0909@163.com.

Funding

the China Agriculture Research System of MOF and MARA Grant No. CARS-30-3-02the National Natural Science Foundation of China 32202237
6 · The paper itself

Abstract

objectivePeach bacterial spot, caused by Xanthomonas arboricola pv. pruni (Xap), poses a significant threat to the global peach industry. Studies have indicated that 41 Xap strains isolated from various peach cultivars in China exhibit moderate genetic differentiation, clear specificity to peach cultivars, and limited geographical differentiation. The genomic information of 36 Xap strains isolated from different countries has been deposited to the NCBI genome database; However, complete genome sequences for Xap strains identified in China remain lacking. In this study, the whole genome of the Xap 9-4 strain, isolated from diseased peach leaves in China, was assembled and annotated. DATA DESCRIPTION: The genomic data of the Xap 9-4 strain was sequenced using the Illumina and PacBio platforms. The whole genome of Xap 9-4 consisted of a 5,174,371 bp circular chromosome and a 41,329 bp circular plasmid, encoding 4,660 protein-coding genes, 201 ncRNAs, 643 repeat regions and 7 prophages. Approximately 94.82% of the proteins were annotated. Phylogenic analysis revealed minimal genetic variation among Xap strains isolated from different countries. These findings will expand the genomic resources for Xap and provide a foundation for further studies on genetic diversity and pathogen-host interaction mechanisms.

Indexed as

Genome, BacterialPlant DiseasesPrunus persicaWhole Genome SequencingXanthomonasChinaGenetic VariationPhylogenyBacterial spotGenome annotationGenome assemblypeachXanthomonas arboricola pv. pruni

Identifiers

PMID41162855
PMCPMC12574199

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.