Evidence map›Paper›PMID 41162582›Full record

ArticleScientific reports2025

A prognostic risk prediction model for gastric cancer based on the EFNA4 and ETS1 regulatory axis in tumor cells.

Yixuan Chen, Ning Wang, Junkun Wang, Shupei Li, Wenchen Zhang, Wenjiang Deng, Jingjing Ye, Zhoujuan Yao, Hui Zhang, Fengsong Wang and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

11 authors.

Yixuan Chen *Department of General Surgery, The First Affiliated Hospital of Anhui Medical University, 100 Huaihai Avenue, Hefei, 230002, Anhui, China.
Ning Wang *School of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China.
Junkun WangDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, 100 Huaihai Avenue, Hefei, 230002, Anhui, China.
Shupei LiSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China.
Wenchen ZhangSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China.
Wenjiang DengHarvard T.H. Chan School of Public Health, Harvard University, 677 Huntington Ave, Boston, MA, 02115, USA.
Jingjing YeSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China.
Zhoujuan YaoSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China.
Hui ZhangSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China. zhanghui520627@hotmail.com.
Fengsong WangSchool of Life Sciences, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui, China. fengsongw@ahmu.edu.cn.
Wenbin WangDepartment of General Surgery, The First Affiliated Hospital of Anhui Medical University, 100 Huaihai Avenue, Hefei, 230002, Anhui, China. nihao22009256@163.com.

Funding

Anhui Medical University Research Fund Project 2021xkj017Clinical Medicine Discipline construction project of Anhui Medical University 9301001807Natural Science Foundation in Anhui Province of China 2008085MH279the Basic and Clinical Cooperative Research Promotion Program of Anhui Medical University 2022xkjT015the National Nature Science Foundation of China 81972641the Natural science research project of universities in Anhui Province 2023AH040093, KJ2021A0242, KJ2021A0332, KJ2021A0321the Scientific Research Foundation of Anhui Medical University 2020xkj042the Scientific Research Foundation of the Institute for Translational Medicine of Anhui Province 2022zhyx-B08, 2021zhyx-C25
6 · The paper itself

Abstract

Gastric cancer (GC) is a major cause of cancer-related deaths worldwide, and is characterised by intricate molecular mechanisms. However, analysis of its molecular and clinical characteristics is complicated by its histological and etiological heterogeneity. Dysregulation of the PI3K-Akt signalling pathway is common in GC. In this study, we have identified the hub gene Ephrin A4 (EFNA4) in the PI3K-Akt pathway based on transcriptome data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, and ETS Proto-Oncogene 1 (ETS1) was a gene related to EFNA4. Using publicly accessible datasets, we conducted bioinformatics analyses to evaluate the expression profiles, functional roles, and prognostic significance of EFNA4 and ETS1 and further explored their relationship in GC. Subsequently, consensus clustering was performed on 373 TCGA-STAD datasets based on the expression matrices of EFNA4 and ETS1 to assess their interconnections with relevant signalling cascades and immune system components. To address the challenges posed by tumour heterogeneity and reveal the expression patterns of EFNA4 and ETS1 in GC tissues, we performed reanalysis of single-cell RNA sequencing (scRNA-seq) data of GC samples. We constructed a tumour-based risk signature for GC based on EFNA4, ETS1, and marker genes of the tumour cell cluster. The prognostic value of the prognosis prediction model was verified using TCGA database to facilitate the clinical application of tumour cell features in GC prognosis. Our study reveals EFNA4 and ETS1 expression patterns in GC, implicating their roles in pathogenesis. An integrated EFNA4-ETS1 prognostic model improves GC risk stratification. Although EFNA4 has been shown to promote metastasis in liver cancer, the contradictory mechanism of its high expression and good prognosis in GC remains to be elucidated, which may involve its antagonistic effects with ETS1, and requires further exploration.

Indexed as

Proto-Oncogene Protein c-ets-1Stomach NeoplasmsBiomarkers, TumorComputational BiologyFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMalePrognosisProto-Oncogene MasSignal TransductionBiomarkers, TumorETS1 protein, humanMAS1 protein, humanProto-Oncogene MasProto-Oncogene Protein c-ets-1EFNA4ETS1Gastric cancer (GC)Immune infiltrationPrognostic modelSignaling pathways

Identifiers

PMID41162582
PMCPMC12572136

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.