Evidence map›Paper›PMID 41162377›Full record

ArticleNature communications2025

A highly accurate risk factor-based XGBoost multiethnic model for identifying patients with skin cancer.

Matteo D'Antonio, Wilfredo G Gonzalez Rivera, Robert A Greenes, Melissa Gymrek, Kelly A Frazer

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Admixture mapping identifies complex trait associations with local ancestry in themedRxiv : the preprint server for health sciences · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Matteo D'AntonioDepartment of Medicine, Division of Biomedical Informatics, University of California, San Diego, La Jolla, CA, USA. mdanto@uw.edu.ORCID http://orcid.org/0000-0001-5844-6433
Wilfredo G Gonzalez RiveraDepartment of Medicine, Division of Biomedical Informatics, University of California, San Diego, La Jolla, CA, USA.
Robert A GreenesDepartment of Medicine, Division of Biomedical Informatics, University of California, San Diego, La Jolla, CA, USA.
Melissa GymrekDepartment of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA.
Kelly A FrazerDepartment of Pediatrics, University of California San Diego, La Jolla, CA, USA. kafrazer@ucsd.edu.ORCID http://orcid.org/0000-0002-6060-8902

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Genetic & Social Determinants of Health: Center for Admixture Science and TechnologyRM1HG011558 · NHGRI · YALE UNIVERSITY · PI FRAZER, KELLY A, GYMREK, MELISSA · 2021 to 2025
$11.2M
San Diego Biomedical Informatics Education & Research (SABER)T15LM011271 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHAMIM NEMATI · 2012 to 2026
$9.7M
American Cancer Society (American Cancer Society, Inc.) IRG-19-230-48-IRGNLM NIH HHS T15 LM011271U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) HG011558U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) RM1HG011558U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute (National Cancer Institute Division of Cancer Epidemiology and Genetics) P30CA023100
6 · The paper itself

Abstract

While individuals of European descent have a higher risk of skin cancer, other ancestries tend to have more advanced disease at diagnosis, resulting in outcome disparities. We examine the diverse All of Us dataset and identify genetic ancestries, lifestyle, social determinants of health and PDE5a inhibitor use as independent risk factors for skin cancer. We integrate these risk factors into a highly accurate XGBoost multiethnic model for identifying patients with skin cancer. Analyses of Shapley scores and interactions indicate the presence of strong non-linear associations between age and other risk factors, in particular cancer history, genetic ancestry and annual income, and suggest a stronger dependence on genetic and social determinants in younger individuals. Our XGBoost multiethnic model offers a precision medicine approach for early skin cancer detection in ethnically diverse patients, which could reduce outcome disparities in individuals of non-European ancestries.

Indexed as

EthnicitySkin NeoplasmsWhite PeopleAdultAgedBoosting Machine Learning AlgorithmsFemaleHumansLife StyleMaleMiddle AgedPrecision MedicineRisk FactorsSocial Determinants of HealthUnited States

Identifiers

PMID41162377
PMCPMC12572141

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.