Evidence map›Paper›PMID 41161821›Full record

Observational studyJournal for immunotherapy of cancer2025

Metagenomic next-generation sequencing unraveled the characteristic of lung microbiota in patients with checkpoint inhibitor pneumonitis: results from a prospective cohort study.

Zhenhua Zhou, Jia-Run Lin, Jiaxin Li, Xintong Huang, Lu Yuan, Jihong Huang, Wenxia Xie, Junyi Lu, Wenqi Huang, Shangwen He and 10 more

Registry-linked trialAbstract readObservational Study
In one paragraph

Observational study in Journal for immunotherapy of cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06192303 (Prospective Study on the Efficacy and Safety of Bronchoalveolar Lavage Combined With Pathogen Metagenomic Sequencing Technology in the Diagnosis of Immune Checkpoint Inhibitor Associated Pneumonia), which is not on this map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06192303 unknown statusnot on this map

Prospective Study on the Efficacy and Safety of Bronchoalveolar Lavage Combined With Pathogen Metagenomic Sequencing Technology in the Diagnosis of Immune Checkpoint Inhibitor Associated Pneumonia

TypeobservationalSponsorNanfang Hospital, Southern Medical UniversityRan2023 to 2026Enrolled104ConditionsImmune Checkpoint Inhibitor Associated PneumoniaArmsBronchoalveolar lavage and pathogen metagenomic sequencing
3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
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  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Zhenhua Zhou *Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0001-5463-9393
Jia-Run Lin *Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0002-5082-0552
Jiaxin Li *Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0005-0328-5931
Xintong Huang *Department of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0004-8904-5105
Lu YuanDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0003-5260-771X
Jihong HuangDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0000-3940-7260
Wenxia XieDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0004-3353-329X
Junyi LuDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0003-7171-0456
Wenqi HuangDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0003-1712-458X
Shangwen HeDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0002-7638-5977
Dong YuDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0002-9921-5014
Hailing ZhangDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0001-7336-3054
Xiaoyue GeDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0007-2052-0424
Meihua LiDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0004-7965-4150
Yaqi MaoDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0009-1381-8841
Fan YangDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0009-0008-9755-5761
Zhong-Kai CuiDepartment of Cell Biology, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong, China.ORCID http://orcid.org/0000-0003-3112-9379
Xiaofang SuDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China liulaiyu@sina.com 1587258375@qq.com 171290466@qq.com.ORCID http://orcid.org/0000-0001-8709-4182
Yongzhong ZhanDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China liulaiyu@sina.com 1587258375@qq.com 171290466@qq.com.ORCID http://orcid.org/0009-0002-1408-8915
Laiyu LiuDepartment of Respiratory and Critical Care Medicine, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China liulaiyu@sina.com 1587258375@qq.com 171290466@qq.com.ORCID http://orcid.org/0000-0001-5827-0802

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCheckpoint inhibitor pneumonitis (CIP) is among the most lethal immune-related adverse events in patients with cancer receiving immunotherapy. This study aims to characterize the lung microbiome in patients with CIP and evaluate its diagnostic potential.

methodsIn a prospective clinical trial (NCT06192303), bronchoalveolar lavage fluid samples (BALF) were obtained from 38 patients presenting clinical symptoms and radiographic evidence of pneumonitis following immunotherapy. The cohort included 14 cases of pure-type CIP (PT-CIP), 14 cases of mixed-type CIP, and 10 cases of pulmonary infection (PI). Metagenomic next-generation sequencing (mNGS) of BALF was employed to delineate the lung microbiota profiles. Using linear discriminant analysis effect size, we discerned characteristic microbiota among the three groups and further explored the associations of signature microbiota with host immune-inflammatory markers. Functional enrichment analysis revealed potential metabolic reprogramming and differences in biological functions between patients with CIP and PI. Finally, leveraging four machine-learning models, we ascertained the clinical value of BALF microbiota profiles in diagnosing CIP.

resultsThe composition of lung microbiota differed significantly between patients with CIP and PI. Microbial taxa, such as

conclusionsOur study represents the unique characterization of the lung microbiota profiles across distinct CIP subtypes and establishes a diagnostic model for CIP based on the decision tree. These findings emphasize the value of BALF mNGS in improving the diagnosis of CIP.

Indexed as

High-Throughput Nucleotide SequencingImmune Checkpoint InhibitorsLungMetagenomicsMicrobiotaPneumoniaAgedBronchoalveolar Lavage FluidFemaleHumansMaleMiddle AgedProspective StudiesImmune Checkpoint InhibitorsImmune related adverse event - irAENext generation sequencing - NGSPneumonitis

Identifiers

PMID41161821
PMCPMC12574374

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.