ArticleNucleic acids research2026
CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs.
Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- Decoding RNA-protein interactions using high-throughput methods.RNA biology · 2026Review
- Multiple intron motifs have redundant functions in the trans-splicing of the mod(mdg4) locus.Nucleic acids research · 2026Article
- RNA-binding proteins in the mouse lens: Functional classifications, expression profiling, and interaction studies of Carhsp1 with crystallin mRNAs.Developmental biology · 2026Article
- LINC00607 facilitates endothelial VEGF-A receptor FLT1 splicing.Molecular therapy : the journal of the American Society of Gene Therapy · 2026Article
- Evaluating splicing factor and kinase network crosstalk through global phosphoproteomics.bioRxiv : the preprint server for biology · 2026Article
- The 2026 Nucleic Acids Research database issue and the online molecular biology database collection.Nucleic acids research · 2026Article
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Authors and funding
12 authors.
Funding
Abstract
RNA-binding proteins (RBPs) are key mediators of post-transcriptional gene regulation, including splicing, transport, stability, and other facets of RNA metabolism. Many RBPs exert their function through sequence-specific protein-RNA interactions. RBP RNA-binding specificity models, or motifs, are thus essential for understanding post-transcriptional gene regulatory mechanisms. Here, we present CisBP-RNA (Catalog of inferred sequence Binding Preferences of RNA-binding proteins), a freely available web-based database that provides centralized access to eukaryotic RBP motif data. A key feature of CisBP-RNA is the availability of both experimentally determined motifs and motifs that are computationally predicted via our homology-based approaches. The current version of CisBP-RNA catalogs >148 000 sequence-specific RBPs across 690 eukaryotic species. Motifs are currently available for >34 000 of these RBPs. Motif data are available for download in a variety of formats for downstream computational analyses. In addition, CisBP-RNA provides user-friendly web-hosted tools to scan for predicted RBP binding sites, predicts motifs for a protein of interest, and compares a motif to motifs contained in the database. The CisBP-RNA database can be accessed through www.cisbp.org/rna/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.