SEND: a suite of tools for the easy sharing of linked biological data.

Rodolfo S Allendes Osorio, Yi-An Chen, Kenji Mizuguchi

Abstract read

In one paragraph

Article in Database : the journal of biological databases and curation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rodolfo S Allendes OsorioPremium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, 2-2 Yamadaoka, Suita-shi, Osaka 565-0871, Japan.ORCID 0000-0002-9627-9338

Yi-An ChenAI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition, 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002, Japan.ORCID 0000-0003-4936-8060

Kenji MizuguchiAI Center for Health and Biomedical Research (ArCHER), National Institutes of Biomedical Innovation, Health and Nutrition, 3-17 Senrioka-Shinmachi, Settsu-shi, Osaka, 566-0002, Japan.ORCID 0000-0003-3021-7078

Funding

OU Master Plan Implementation ProjectThe Uehara Memorial FoundationWorld Premier International Research Center Initiative (WPI), MEXT, Japan

6 · The paper itself

Abstract

Here, we introduce SEND (Share Easily bioiNformatics Data), a suite of tools that allow users to share heterogeneous and linked biological data, in an easy and highly customizable way. The code for SEND is freely available on GitHub (https://github.com/targetmine). Also, docker images of all different components of the system are directly available for download from DockerHub (https://hub.docker.com/search?q=rallendes; contact: Rodolfo S. Allendes Osorio, rodolfo.allendes.prime@osaka-u.ac.jp; Kenji Mizuguchi, kenji@protein.osaka-u.ac.jp). Links to additional figures/data available on a web site, or references to online-only supplementary data available at the journal's web site.

Indexed as

Computational BiologyInformation DisseminationSoftwareHumansInternet

Identifiers

PMID41158062

DOI10.1093/database/baaf068

PMCPMC12569301

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.